Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 275 a.a., Flagellar biosynthetic protein FliP from Xanthobacter sp. DMC5

 Score =  120 bits (300), Expect = 3e-32
 Identities = 70/208 (33%), Positives = 121/208 (58%), Gaps = 11/208 (5%)

Query: 18  LALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIMAPVGYEIAE 77
           L++ P LLI+ TSF + VI     R+ +G+   P ++ +  ++L  T ++M P  ++ A 
Sbjct: 69  LSVAPGLLIMVTSFTRFVIAFSFLRSGLGLPSTPANLVLVSLSLFMTFYVMGPT-FDRAW 127

Query: 78  GIKASPVDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTHLLENTARLWPAK------M 131
                P+ T + ++  +  +    P R FML +V    L    +  +R  PA+       
Sbjct: 128 QDGVKPL-TENRMDEEEALQRIADPFRDFMLTHVRGKDLKLFADIASRDKPAEETANAPA 186

Query: 132 AQEVQREDLI---LLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188
           A E   E+ +   +L+PAF++S+L+ GFEIGFLI +PF++ID+IV+ L++++GM M+ P 
Sbjct: 187 APEKAGEEKVPMRVLIPAFMISELRRGFEIGFLIVLPFLIIDMIVATLVMSMGMMMMPPA 246

Query: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSY 216
            ISLP K+L F+++ GW+ L+  L  S+
Sbjct: 247 VISLPFKILFFILIDGWNLLVGGLIRSF 274