Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 247 a.a., flagellar biosynthesis protein flip from Pseudomonas simiae WCS417

 Score =  142 bits (359), Expect = 4e-39
 Identities = 84/218 (38%), Positives = 135/218 (61%), Gaps = 26/218 (11%)

Query: 9   LILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIM 68
           L + L + AL+ +P  +++ TSF +I+IV  I R A+G+QQ P +  + G+AL  TLFIM
Sbjct: 43  LQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIM 102

Query: 69  APVGYEIAEGIKASPVDTSSVINFL---QTGREAIQ----PLRAFML---RNVDPDVLTH 118
           APV            V+  ++  +L    T ++AI     P++ FML   R+ D ++   
Sbjct: 103 APV---------FDKVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMR 153

Query: 119 LLENTARLWPAKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLL 178
           L + T    P        +  L +LVPAFV S+L+  F+IGF+I+IPF++IDL+V+++L+
Sbjct: 154 LSKRTDIATP-------DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLM 206

Query: 179 ALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSY 216
           A+GM M+SP+ ISLP K++LFV+V GW+ ++ +L  S+
Sbjct: 207 AMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 244