Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 257 a.a., Flagellar biosynthesis protein FliP from Variovorax sp. SCN45

 Score =  151 bits (381), Expect = 1e-41
 Identities = 86/217 (39%), Positives = 140/217 (64%), Gaps = 10/217 (4%)

Query: 2   TFQGIDPLILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIAL 61
           T +    L + L +  LA++P LL+  TSFL+I++VL + R+AIG+ + PP+  + G+AL
Sbjct: 48  TTETAQALRVVLGLTVLAILPSLLVCLTSFLRIIVVLSMLRHAIGMNETPPNTVLIGLAL 107

Query: 62  AATLFIMAPVGYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFMLRNVDPDVLTHLLE 121
             TLF M+PV  ++ +   A     +  ++  +   + + PLR FM+R      L  ++E
Sbjct: 108 FLTLFTMSPVLQKVNQD--AFEPFMAGKLSMEEGYGKGVAPLRDFMVRQTREADLALMVE 165

Query: 122 NTARLWPAKMAQEVQREDL--ILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLA 179
            +    P  M      +D+  + L+PAF+LS+L+A F+IGF+I++PF++IDLIVS++L+A
Sbjct: 166 LSKAPAPRSM------DDIGNVQLIPAFMLSELRAAFQIGFVIFLPFLLIDLIVSSILMA 219

Query: 180 LGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSY 216
           LGM M+ P TI+LPLK+L+FV+V GWS +L +L  S+
Sbjct: 220 LGMMMMPPTTIALPLKILMFVLVDGWSLVLKALVGSF 256