Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 251 a.a., flagellar export apparatus subunit from Pseudomonas putida KT2440

 Score =  145 bits (366), Expect = 7e-40
 Identities = 83/215 (38%), Positives = 132/215 (61%), Gaps = 20/215 (9%)

Query: 9   LILALFVGALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIM 68
           L + L + AL+ +P  +I+ TSF +I+IV  I R A+G+QQ P +  + G+AL  T+FIM
Sbjct: 47  LQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIM 106

Query: 69  APVGYEIAEGIKASPVDTSSVINFLQTGREAIQ----PLRAFML---RNVDPDVLTHLLE 121
           APV   + +            +    T ++AI     PL+ FML   R  D D+   L +
Sbjct: 107 APVFDRVNQDA------LQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSK 160

Query: 122 NTARLWPAKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALG 181
            T    P ++        L +LVPAFV S+L+  F+IGF+I+IPF++ID++V+++L+A+G
Sbjct: 161 RTDIAGPDQVP-------LTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMG 213

Query: 182 MQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSY 216
           M M+SP+ ISLP K++LFV+V GW+ ++ +L  S+
Sbjct: 214 MMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248