Pairwise Alignments

Query, 217 a.a., type III secretion system protein SsaR from Pseudomonas simiae WCS417

Subject, 251 a.a., Flagellar biosynthetic protein FliP precursor from Alteromonas macleodii MIT1002

 Score =  148 bits (373), Expect = 1e-40
 Identities = 82/209 (39%), Positives = 133/209 (63%), Gaps = 12/209 (5%)

Query: 12  ALFV-GALALMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAVNGIALAATLFIMAP 70
           ALF+  AL+L+P  +++ TSF +I++VL I R AIG+QQ P +  + G++L  ++FIMAP
Sbjct: 47  ALFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAP 106

Query: 71  VGYEIAEGIKASPVDTSSVINFLQTGREAIQPLRAFML---RNVDPDVLTHLLENTARLW 127
           V  E+ E  +A     +  +  L    +A  P+RAFML   R  D +    +  +  +  
Sbjct: 107 VFEEVNE--RALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGKY- 163

Query: 128 PAKMAQEVQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 187
                 +     L +L+PAFV S+L+  F+IGF+++IPF++IDL+V+++L+A+GM M+SP
Sbjct: 164 -----ADTNEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSP 218

Query: 188 MTISLPLKLLLFVMVSGWSRLLDSLFLSY 216
           M +SLP KL+LFV+V GW+ +  +L  S+
Sbjct: 219 MIVSLPFKLMLFVLVDGWNLIFGTLATSF 247