Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 696 a.a., flagellar biosynthesis protein FlhA from Rhodanobacter sp000427505 FW510-R12

 Score =  361 bits (927), Expect = e-104
 Identities = 239/712 (33%), Positives = 405/712 (56%), Gaps = 52/712 (7%)

Query: 1   MTALSAINSFLLKVAQRAEVLGAVVVMAIVF-IFIVPLPTWLVDILIALNICISCLLIVL 59
           MT    + +F  ++A+R   LGA V+M ++  + ++PLP +L+D+L + NI +S ++++ 
Sbjct: 1   MTGADVLGNFK-QLARRG--LGAPVMMLVMLAMLMLPLPPFLLDMLFSFNIALSLVILLA 57

Query: 60  ALYLPGPLAFSSFPSILLLTTMFRLALSIATTRLILLEQD-----AGHIVEAFGNFVVGG 114
            +Y+  PL F++FP+++L+ T+ RLAL+IA+TR++LL        AG ++EAFG FV+GG
Sbjct: 58  VVYVMRPLEFAAFPTVVLMATLLRLALNIASTRVVLLHGHDGPGAAGKVIEAFGEFVIGG 117

Query: 115 NLAVGMVIFLILTLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQA 174
           N AVG+V+F I+T++NF+V+TKG+ RV+EV ARF+LDAMPGKQM+ID+DL AGL+   QA
Sbjct: 118 NFAVGLVVFAIITIINFVVVTKGATRVSEVTARFTLDAMPGKQMAIDADLNAGLLTQDQA 177

Query: 175 RDKREQLSRESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISL 234
           R++R+++  E+  +G+MDGA KFV+GDA AG++I+++N++GGF  G+ QHGLSA E+   
Sbjct: 178 RERRQEVREEADFYGSMDGASKFVRGDATAGILILIINIVGGFFVGVMQHGLSAGEAAKT 237

Query: 235 YSVLTIGDGLIAQIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIAS 294
           Y++LTIGDGL+AQ+PAL++S+   +I+TRV+      + +MG ++  Q+  +P++  +A+
Sbjct: 238 YTLLTIGDGLVAQVPALMLSVATAIIVTRVSK-----SQDMGKQVIGQVFGQPRALGVAA 292

Query: 295 VGMLAFAVVPGMPTGVFILIALVTGSLGYYLM-RQRQRQEQPAAETAE----AVRPE--E 347
             +    ++PGMP   F+L+    G + + L+ R+R+ + + A  TAE     V PE  E
Sbjct: 293 AVLTVMGLIPGMPNVAFLLLGASCGGVAWLLLKRERETRARLAESTAEKPAPTVAPERVE 352

Query: 348 NGSEDLRGFDP-SRPYLLQFSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELD 406
            G ED+   DP       +  P++    +  +L+  I+  R  L   +G  +P   +  +
Sbjct: 353 LGWEDVASVDPLGLEVGYRLIPLV-DVHQGGELMGRIKSVRRKLSQELGFLVPAVHIRDN 411

Query: 407 DSLADDEMRFCVHEVPMVKASVVSHVAVERKALSVEPAH---AIAGLVERDEQ---DWLW 460
             L  +  R  +  VPM +A V +      + +++ P      + G+  +D     + +W
Sbjct: 412 LDLGPNTYRITLMGVPMGEAEVHN-----ERLMAINPGQVHGTLQGIATQDPAFGLEAVW 466

Query: 461 LAPDDPLLDDPQLERFTA---ASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPEL 517
           +      L   Q   +T    A++I   +   +     + L  Q+ + +L  L    P+L
Sbjct: 467 IESGQREL--AQSYGYTVVDPATVIATHLSHILQGHAHELLSHQDVQQLLDRLAATAPKL 524

Query: 518 VQEL-QRIMPLSRFSAVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALK 576
           V++L  + + L     VLQ L +E VP+R +R IVESL E+    ++P  L    R+AL 
Sbjct: 525 VEDLVPKRLTLGVVVKVLQNLLAERVPIRNMRSIVESLAEHAGQSQDPGVLTAAVRVALG 584

Query: 577 AQIYHQYSE-ADGLHAWLLSPQTENILREALRQTQTGVFFA------LDDEHSAVLVSLL 629
            QI  + +     +    L+P+ E IL  +L  +  GV  A       D    +V  +  
Sbjct: 585 RQIVQEITGLGTEVPVITLAPELEQILLGSL--SGGGVAGAAVEPGLADRLQQSVADAAR 642

Query: 630 NQAFPVRPKLKSVMLVAQDLRSPLRTLLLEEFNHVPVLSFAELGSASKVKVL 681
            Q     P   +V+LVA  LR  L         ++ VL++ E+    +V+++
Sbjct: 643 RQELSGEP---AVLLVAPLLRPWLARFTRHVAQNLHVLAYNEVPDNRRVRLV 691