Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 709 a.a., flagellar biosynthesis protein FlhA from Pseudomonas simiae WCS417

 Score =  336 bits (861), Expect = 3e-96
 Identities = 203/622 (32%), Positives = 355/622 (57%), Gaps = 51/622 (8%)

Query: 24  VVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSILLLTTMFR 83
           ++++ ++ + ++P+P +L+D+    NI +S +++++ +Y   PL F+ FP+ILL+ T+ R
Sbjct: 26  LLLLVMLAMMMLPMPPFLLDVFFTFNIALSVVVLLVCVYALRPLDFAVFPTILLVATLLR 85

Query: 84  LALSIATTRLILLEQDAGH-----IVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGS 138
           LAL++A+TR+++L    GH     +++AFG  V+GGN  VG+V+F IL ++NF+V+TKG+
Sbjct: 86  LALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVVTKGA 145

Query: 139 ERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDGAMKFV 198
            R++EV+ARF+LDAMPGKQM+ID+DL AGLID  QA+ +R ++++E++ +G+MDGA KFV
Sbjct: 146 GRISEVSARFTLDAMPGKQMAIDADLNAGLIDQNQAKSRRLEVAQEAEFYGSMDGASKFV 205

Query: 199 KGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLISLTAG 258
           +GDAIAGL+I+ +NL+GG + G+FQHG++  ++  +Y++LTIGDGL+AQ+P+LL+S  A 
Sbjct: 206 RGDAIAGLLILFINLIGGMAVGIFQHGMTFGDAGKVYALLTIGDGLVAQLPSLLLSTAAA 265

Query: 259 MIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVFILIALVT 318
           +++TR +     G+ +MG +I+RQM + PK+  +A+  M    +VPGMP   F+ +A + 
Sbjct: 266 IMVTRAS-----GSEDMGKQISRQMFASPKALAVAAGIMAIMGIVPGMPHVSFLSMAAMA 320

Query: 319 GSLGYYLMRQRQ------------RQEQPAAETAEAVRPEENGSEDLRGFDPSRPYLLQF 366
              G YL  ++Q            RQ++     A A   +E G +D+   D     ++  
Sbjct: 321 AG-GAYLFWKKQNAVKVQAQQEIARQQELLPSPARAQETKELGWDDVTPID-----MIGL 374

Query: 367 SPVIRGTPEV-----ADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEV 421
               R  P V       L+  I+  R  L  ++G  +P   +  +  LA    R  +  V
Sbjct: 375 EVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAPSAYRLTLMGV 434

Query: 422 PMVKASVVSHVAVERKALSVEPAH---AIAGLVERDEQ---DWLWLAPDDPLLDDPQLER 475
            + +A +        + L++ P     ++ G+  +D     D +W+  +       Q   
Sbjct: 435 ILAEAEIYPD-----RELAINPGQVFGSLNGITAKDPAFGLDAVWI--EISQRSQAQSLG 487

Query: 476 FT---AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSRFS 531
           +T   A++++   + Q +     + +G +E + ++  L    P+L +EL   ++ LS+  
Sbjct: 488 YTVVDASTVVATHLNQILYKHSHELIGHEEVQQLMGLLAKASPKLAEELVPGVLSLSQLL 547

Query: 532 AVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADG-LH 590
            VLQ L +E VP+R +R I E++       ++  AL    R+ L   I       D  L 
Sbjct: 548 KVLQALLAEQVPVRDIRSIAEAIANNAAKSQDTAALVAAVRVGLSRAIVQSIVGLDSELP 607

Query: 591 AWLLSPQTENILREALRQTQTG 612
              L P+ E IL  ++++   G
Sbjct: 608 VITLEPRLEQILLNSIQKAGQG 629