Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 709 a.a., flagellar export pore protein from Pseudomonas putida KT2440

 Score =  332 bits (850), Expect = 5e-95
 Identities = 203/621 (32%), Positives = 350/621 (56%), Gaps = 49/621 (7%)

Query: 24  VVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSILLLTTMFR 83
           ++++ ++ + ++P+P +L+D+    NI +S +++++ +Y   PL F++FP+ILL+ T+ R
Sbjct: 26  LLLLVMLAMMMLPIPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAAFPTILLVATLLR 85

Query: 84  LALSIATTRLILLEQDAGH-----IVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGS 138
           LAL++A+TR+++L    GH     +++AFG  V+GGN  VG V+F IL ++NF+V+TKG+
Sbjct: 86  LALNVASTRVVMLHGQEGHGAAGKVIQAFGEVVIGGNYVVGAVVFAILMIINFVVVTKGA 145

Query: 139 ERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDGAMKFV 198
            R++EV+ARF+LDAMPGKQM+ID+DL AGLID  QA+ +R ++++E++ +G+MDGA KFV
Sbjct: 146 GRISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKHRRAEVAQEAEFYGSMDGASKFV 205

Query: 199 KGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLISLTAG 258
           +GDAIAGL+I+ +NL+GG   GM QH +S SE+  +Y++LTIGDGL+AQ+P+LL+S  A 
Sbjct: 206 RGDAIAGLLILFINLIGGMLIGMLQHNMSFSEAGKVYALLTIGDGLVAQLPSLLLSTAAA 265

Query: 259 MIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVFILIALVT 318
           +++TR +     G+ +MG  I RQM   PK+  ++   M+   +VPGMP   F+ + L+ 
Sbjct: 266 IMVTRAS-----GSEDMGKLINRQMFDSPKALAVSGALMIVMGLVPGMPHIAFLSLGLMA 320

Query: 319 GSLGYYLMRQRQRQEQPAAETAE-----------AVRPEENGSEDLRGFDPSRPYLLQFS 367
               Y + +++Q+ +  A + A+           A+  +E G +D+   D     ++   
Sbjct: 321 AGGAYLVWKKQQQAKVKAQQEAQRQQDLLPSPQRALETKELGWDDVTPID-----MIGLE 375

Query: 368 PVIRGTPEV-----ADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVP 422
              R  P V       L+  I+  R  L  ++G  +P   +  +  L     R  +  V 
Sbjct: 376 VGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLQPSAYRLTLMGVI 435

Query: 423 MVKASVVSHVAVERKALSVEPAH---AIAGLVERDEQ---DWLWLAPDDPLLDDPQLERF 476
           + +A +        + L++ P      + G+  RD     + +W+  D       Q   +
Sbjct: 436 LAEAEIYPD-----RELAINPGQVFGTLNGIAARDPAFGLEAVWI--DVGQRSQAQSLGY 488

Query: 477 T---AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSRFSA 532
           T   A++++   + Q +     + +G +E + +L  L    P+L +EL   ++ LS    
Sbjct: 489 TVVDASTVVATHLNQILQKHCHELIGHEEVQQLLQVLAKASPKLAEELVPGVISLSGLLK 548

Query: 533 VLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIAL-KAQIYHQYSEADGLHA 591
           VLQ L SE VP+R +R I E++       ++  AL    R+ L +A +         L  
Sbjct: 549 VLQALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLCRAIVQSIVGVESELPV 608

Query: 592 WLLSPQTENILREALRQTQTG 612
             L P+ E IL  +L++   G
Sbjct: 609 ITLEPRLEQILLNSLQRAGQG 629