Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 681 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  451 bits (1160), Expect = e-131
 Identities = 264/684 (38%), Positives = 423/684 (61%), Gaps = 33/684 (4%)

Query: 15  AQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPS 74
           A R +++ A V++  + + ++PLPTW+VDILI +N+  S +L+++A+YL  PL  S FPS
Sbjct: 19  AGRQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPS 78

Query: 75  ILLLTTMFRLALSIATTRLILLEQDAGHIVEAFGNFVVGGNLAVGMVIFLILTLVNFLVI 134
           +LL+TT++RL+L+I+T+RL+LL+ +AG+IV+AFG FVVGGNL VG+V+F I+T+V F+VI
Sbjct: 79  LLLITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVI 138

Query: 135 TKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDGA 194
           TKG ERVAEV+ARFSLD MPGKQMSID DLRAG+ID   AR  R+ + +ES+  GAMDGA
Sbjct: 139 TKGIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGA 198

Query: 195 MKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLIS 254
           MKFVKGD IAG+I+V+VN++GG    + Q+ +S SE++  YSVL+IGDGL  QIP+LLIS
Sbjct: 199 MKFVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLIS 258

Query: 255 LTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVFILI 314
           L+AG+I+TRV  + R+   N+  E++ Q+  +P+S ++ +V ++  A++PG P   FI +
Sbjct: 259 LSAGIIVTRVPGEKRQ---NLATELSSQIARQPQSLILTAVVLMLLALIPGFP---FITL 312

Query: 315 ALVTGSLGYYLMRQRQRQEQPAAETAEAVRPEENGSEDLRGFDPSRPYLLQFSPVIRGTP 374
           A  +  L   ++  R+++   +A   EA  PE++          + P +L+ SP +    
Sbjct: 313 AFFSALLALPIILIRRKKSVVSANGVEA--PEKDSM-----VPGACPLILRLSPTLHS-- 363

Query: 375 EVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVPMVKASV---VSH 431
             ADL+  I   R  L  + G+ LP   +E+      +++   +++ P+   S+     +
Sbjct: 364 --ADLIRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPVFSLSIPAQADY 420

Query: 432 VAVERKALSVEPAHAIAGLVERDEQDWLWLAPDDPLLDDPQ---LERFTAASLIVERMKQ 488
           + +   A  V  +  +   + +      WL  D  +    Q   L+ F  +  I   +K 
Sbjct: 421 LLIGADASVVGDSQTLPNGMGQ----ICWLTKD--MAHKAQGFGLDVFAGSQRISALLKC 474

Query: 489 AMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSAVLQRLASEGVPLRAVR 548
            ++    +F+G+QE++ +++ +E N  ELV+ELQR +P+++ +  LQRL SE V +R +R
Sbjct: 475 VLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLR 534

Query: 549 LIVESLIEYGQHEREPDALADYARIALKAQIYHQYS-EADGLHAWLLSPQTENILREALR 607
           LI  +LI++   E++   L +Y RIAL+  I  + + E   L    +    EN++RE++R
Sbjct: 535 LIFGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIR 594

Query: 608 QTQTGVFFALDDEHSAVLVSLLNQAFPVRPKLKSVMLVAQDLRSPLRTLLLEEFNHVPVL 667
           QT  G + AL   H   ++ L+ QA  ++   K  ++ + D R  LR +       VP+L
Sbjct: 595 QTAMGTYTALSSRHKTQILQLIEQA--LKQSAKLFIVTSVDTRRFLRKITEATLFDVPIL 652

Query: 668 SFAELGSASKVKVLGRFDLGQDEL 691
           S+ ELG  S ++V+   DL ++EL
Sbjct: 653 SWQELGEESLIQVVESIDLSEEEL 676