Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 692 a.a., flagellar biosynthesis protein A (NCBI) from Escherichia coli BW25113

 Score =  352 bits (904), Expect = e-101
 Identities = 232/692 (33%), Positives = 384/692 (55%), Gaps = 43/692 (6%)

Query: 12  LKVAQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSS 71
           LK  Q   + G ++++ I+ + ++PLP +++D+L   NI +S +++++A++    L F++
Sbjct: 14  LKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAA 73

Query: 72  FPSILLLTTMFRLALSIATTRLILLEQD-----AGHIVEAFGNFVVGGNLAVGMVIFLIL 126
           FP+ILL TT+ RLAL++A+TR+IL+E       AG +VEAFG+F+VGGN A+G+V+F+IL
Sbjct: 74  FPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVIL 133

Query: 127 TLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQ 186
            ++NF+VITKG+ R+AEV ARF LD MPGKQM+ID+DL AGLI   +A+ +R ++++E+ 
Sbjct: 134 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEAD 193

Query: 187 LFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIA 246
            +G+MDGA KFV+GDAIAG++I+V+N++GG   G+ QHG+S   +   Y++LTIGDGL+A
Sbjct: 194 FYGSMDGASKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVA 253

Query: 247 QIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGM 306
           QIPAL+IS  AG+I+TRV+ D      ++G ++  Q+ S P   ++++  +    +VPGM
Sbjct: 254 QIPALVISTAAGVIVTRVSTD-----QDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGM 308

Query: 307 PTGVFILIALVTGSLGYYLMRQRQRQEQPAAETAEAVRPEENGSEDLRGFDPSRPYLLQF 366
           P  VF+L       L +++   R R+++  AE       E N   +    D      L  
Sbjct: 309 PNLVFLLFTAGLLGLAWWI---RGREQKAPAEPKPVKMAENNTVVEATWNDVQLEDSLGM 365

Query: 367 SPVIRGTPEV-----ADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEV 421
               R  P V      +L+  IR  R      +G  LPP  V + D++   +++   + +
Sbjct: 366 EVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGF-LPPV-VHIRDNM---DLQPARYRI 420

Query: 422 PMVKASVVSHVAVERKALSVEPAHAIAGLVERDEQD------WLWLAPDDPLLDDPQLER 475
            M    + S  A   + L++ P  A   L      D       +W+  +  L +  Q++ 
Sbjct: 421 LMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWI--ESALKEQAQIQG 478

Query: 476 FT---AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSRFS 531
           +T   A++++   +   +     +  G QE++ +L  +    P+L ++L   ++ L+   
Sbjct: 479 YTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLH 538

Query: 532 AVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQ-YSEADGLH 590
            VLQ L  E VP+R +R I+E+L E+   + +P  L    R+AL   I  Q +   D +H
Sbjct: 539 KVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVH 598

Query: 591 AWLLSPQTENILREALRQTQTGVFFALDDEHSAVLVSLLNQAFPVRPKLKS--VMLVAQD 648
              L    E +L +AL Q   G+   L D     L++   +A   +  L +  V+LV   
Sbjct: 599 VIGLDTPLERLLLQAL-QGGGGLEPGLADR----LLAQTQEALSRQEMLGAPPVLLVNHA 653

Query: 649 LRSPLRTLLLEEFNHVPVLSFAELGSASKVKV 680
           LR  L   L      + VLS  EL     +++
Sbjct: 654 LRPLLSRFLRRSLPQLVVLSNLELSDNRHIRM 685