Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 693 a.a., flagellar biosynthesis protein FlhA from Erwinia tracheiphila SCR3

 Score =  348 bits (893), Expect = e-100
 Identities = 232/692 (33%), Positives = 382/692 (55%), Gaps = 41/692 (5%)

Query: 12  LKVAQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSS 71
           +K  Q   + G V+++ I+ + ++PLP++++D+L   NI +S +++++A++    L F++
Sbjct: 13  IKDTQWQVMAGPVLILMILSMMVLPLPSFVLDLLFTFNIALSIMVLLVAMFTQRTLEFAA 72

Query: 72  FPSILLLTTMFRLALSIATTRLILLE-----QDAGHIVEAFGNFVVGGNLAVGMVIFLIL 126
           FP+ILL +T+ RLAL++A+TR+ILLE       AGH+VEAFG+F+VGGN A+G+V+F+IL
Sbjct: 73  FPTILLFSTLLRLALNVASTRIILLEGHTGASAAGHVVEAFGHFLVGGNFAIGIVVFIIL 132

Query: 127 TLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQ 186
            ++NF+VITKG+ R+AEV ARF LD MPGKQM+ID+DL AGLI    A+ +R ++++E+ 
Sbjct: 133 VIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEEVAKKRRSEVTQEAD 192

Query: 187 LFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIA 246
            +G+MDGA KFV+GDAIAG++I+V+N++GG   G+ QHG+    +   Y++LTIGDGL+A
Sbjct: 193 FYGSMDGASKFVRGDAIAGIMIMVINVIGGLLVGVVQHGMDVGHAAESYTLLTIGDGLVA 252

Query: 247 QIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGM 306
           QIPAL+IS  AG+I+TRV+ +      ++G ++ RQ+ + P+  M+++  +    +VPGM
Sbjct: 253 QIPALVISTAAGVIVTRVSTE-----QDVGEQMVRQLFTNPRVMMLSAGVLGMLGLVPGM 307

Query: 307 PTGVFILIALVTGSLGYYLMRQRQRQEQPAAETAEAV--RPEENGSEDLRGFDPSRPYLL 364
           P  VF+L       L +YL   R +Q +P  E    V    E   + +    D      L
Sbjct: 308 PNFVFLLFTAALLGLAWYL---RGKQAKPKVEPQGGVVKTTETPANVEASWTDVQLEDSL 364

Query: 365 QFSPVIRGTPEV-----ADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVH 419
                 R  P V      +L+  IR  R      +G  LPP  V + D++   E+    +
Sbjct: 365 GMEVGYRLIPMVDHLQDGELLGRIRSIRKKFAQEMGF-LPPV-VHIRDNM---ELPPARY 419

Query: 420 EVPMVKASVVSHVAVERKALSVEPAHAIAGLVERDEQD------WLWLAPDDPLLDDPQL 473
            + M    + S  A   + +++ P  A   L      D       +W+  D  L +  Q+
Sbjct: 420 RILMKGVEIGSGDAYPGRWMAINPGTAAGTLPGEATVDPAFGLAAIWI--DSALKEQAQI 477

Query: 474 ERFT---AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSR 529
           + +T   A++++   +   +     +  G QE++ +L  +    P+L ++L   ++ L+ 
Sbjct: 478 QGYTVVEASTVVATHLNHLIGQHASELFGRQEAQQLLDRVTQEMPKLTEDLIPGVITLTT 537

Query: 530 FSAVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADGL 589
              VLQ L +E V +R +R I+E+L E+   + +P  L    R+AL   I  Q+    G 
Sbjct: 538 LHKVLQNLLAERVSIRDMRTIIETLAEHAPVQNDPQELTAVVRVALGRAITQQWFPGTGE 597

Query: 590 HAWL-LSPQTENILREALRQTQTGVFFALDDEHSAVLVSLLNQAFPVRPKLKSVMLVAQD 648
              + L    E +L +AL Q   G+   L D   A   S L  A         V+LV   
Sbjct: 598 AQVIGLDTTLERLLLQAL-QGGGGLEPGLADRLLAQAQSAL--AHQESLGAPPVLLVNHP 654

Query: 649 LRSPLRTLLLEEFNHVPVLSFAELGSASKVKV 680
           LR+ L   L      + V+S  E+    ++++
Sbjct: 655 LRALLARFLRRNLPQLMVISNLEMTDNRQIRM 686