Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 686 a.a., EscV/YscV/HrcV family type III secretion system export apparatus protein from Escherichia coli ECRC102

 Score =  413 bits (1061), Expect = e-119
 Identities = 248/690 (35%), Positives = 406/690 (58%), Gaps = 25/690 (3%)

Query: 8   NSFLLKVAQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPL 67
           N  L+ +    E++   +++ I+ + I+PLPT+L+D LI LN+ ++ L+ + + Y+   L
Sbjct: 3   NKVLVGLRSHPELIILGLMVMIIAMLIIPLPTYLIDFLIGLNLTLAILVFLGSFYVDRIL 62

Query: 68  AFSSFPSILLLTTMFRLALSIATTRLILLEQDAGHIVEAFGNFVVGGNLAVGMVIFLILT 127
           +FSSFPSILL+TT+FRLAL+I+T+RLILLE DAG I+ +FG FV+G +L VG VIF I+T
Sbjct: 63  SFSSFPSILLITTLFRLALAISTSRLILLEADAGEIITSFGEFVIGDSLVVGFVIFSIVT 122

Query: 128 LVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQL 187
           +V F+VITKGSERVAEVAARFSLD MPGKQMSID+DLRAG+ID   A+++R  L RESQL
Sbjct: 123 IVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLRAGIIDADLAKERRSVLERESQL 182

Query: 188 FGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQ 247
           +G+ DGAMKF+KGDAIA +II+ VN++GG S G+ Q+G+  S ++++Y++LT+GDGL++Q
Sbjct: 183 YGSFDGAMKFIKGDAIANIIIIFVNIIGGLSVGVGQNGMDFSTALTVYTILTVGDGLVSQ 242

Query: 248 IPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMP 307
           IPALLI+++AG I+TRV  D    + NMG  I  Q+ S     ++  V  L+  ++PG P
Sbjct: 243 IPALLIAISAGFIVTRVNGD----SDNMGQNIMSQLLSNSFVIVVTCVLALSIGLLPGFP 298

Query: 308 TGVFILIALVTGSLGYYLMRQRQRQEQPAAETAEAVRPEENGSEDLRGFDPSRPYLLQFS 367
             VF+ +A++ G + +Y   +++  E+   E    V  E    +D    D S   + +  
Sbjct: 299 LLVFLCLAVILG-IYFYFKFKKKGTEETVVEGDITVGLEPYNQDD----DISLGIINKLD 353

Query: 368 PVIRGTPEVADLVHSIR-----------QARNALVANIGLTLPPFEVELDDSLADDEMRF 416
            VI  T  +  +++S++           + R+      G+ +P   +   + L D+++  
Sbjct: 354 QVITETVPLVLIMNSVQAKKYTEINLADRIRSQFFIEYGIRIPGIVIREGEGLNDEDVIL 413

Query: 417 CVHEVPMVKASVVSHVA--VERKALSVEPAHAIAGLVERDEQDWLWLAPDD-PLLDDPQL 473
            ++EV   +  +   +   VE     V        +V  + + + W+   D   L     
Sbjct: 414 MLNEVRASQFKIYHDLVLLVEYSDEVVSTLIKKPVIVNSNGEQYYWVTKSDAQKLTKIGC 473

Query: 474 ERFTAASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSAV 533
              TA   +   +   +  +  ++ GIQE+K IL  LE    +L++E+ R + + R S V
Sbjct: 474 YTRTAMDEMYNHLSVCLAHNINEYFGIQETKYILDQLEMKYSDLLKEILRYITVQRISEV 533

Query: 534 LQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADGLHAWL 593
           +QRL  E + +R +RL++E+L  +   E++   L ++ R AL   I H++S +  + A +
Sbjct: 534 IQRLIQERISVRNMRLVMEALALWSPREKDIITLVEHVRGALGRYICHKFSYSGEIKAIV 593

Query: 594 LSPQTENILREALRQTQTGVFFALDDEHSAVLVSLLNQAFP-VRPKLKSVMLVAQ-DLRS 651
           +SP+ E+ +R+ +R T  G F  LD   + +++     A   +   +K ++L+   D+R 
Sbjct: 594 ISPEIEDRIRDGVRPTAGGTFLNLDASEAEMILDNFKLALSGINIPIKDIILLGSVDIRR 653

Query: 652 PLRTLLLEEFNHVPVLSFAELGSASKVKVL 681
            ++ L+   +  + VLS+ EL     V +L
Sbjct: 654 FIKKLIESSYRDLEVLSYGELTENVPVNIL 683