Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 699 a.a., flagellar biosynthesis protein FlhA from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  317 bits (811), Expect = 2e-90
 Identities = 214/690 (31%), Positives = 362/690 (52%), Gaps = 34/690 (4%)

Query: 17  RAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSIL 76
           R EVL AV V+ ++ + I+P+P +L+D+L+A ++  S L+++ A+ +  PL F+ FP++L
Sbjct: 20  RGEVLMAVGVIGVIMLLILPVPKFLLDLLLAFSLVSSVLILMTAVMMKRPLDFAIFPTVL 79

Query: 77  LLTTMFRLALSIATTRLILLEQDAGH-----IVEAFGNFVVGGNLAVGMVIFLILTLVNF 131
           L++T+FRL L++A+TRLIL     GH     ++ AFG  ++GGN  +G++IF I+ +VNF
Sbjct: 80  LVSTLFRLGLNLASTRLILTHGQEGHDAAGQVINAFGQLMMGGNFIIGVIIFAIILVVNF 139

Query: 132 LVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAM 191
           +VITKGS R+AEV+ARF+LD+MPGKQM+ID+DL +GLI   QA+ +R++L +ES  FGAM
Sbjct: 140 VVITKGSTRIAEVSARFTLDSMPGKQMAIDADLSSGLITEDQAKLRRKELEQESTFFGAM 199

Query: 192 DGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPAL 251
           DGA KFV+GDA+AGLII  +N +GG   G  QHG+ A E+ + Y  LTIGDGL+ Q+PA+
Sbjct: 200 DGASKFVRGDAVAGLIITFINAIGGILIGTLQHGMPAMEAANTYVQLTIGDGLVTQVPAI 259

Query: 252 LISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVF 311
           +IS+ AG ++++   +G    +     +  Q+ + P S  + S       ++PGMP   F
Sbjct: 260 IISIAAGFLVSKAGVEGTADKA-----MVTQLATNPVSLGVVSGAAGLIGLIPGMPLIPF 314

Query: 312 ILIALVTGSLGYYLMRQR---QRQEQPAAETAEAVRPEENGSEDLRG---FDPSRPYLLQ 365
             +A+ +G + + L R R   Q  E   A  A A +P+E+  E +      D  +  L  
Sbjct: 315 AALAIGSGFMAWRLGRNRLKPQPTEAEIAAAAAAAKPKEDVEEPIANVLTIDEVKIELGY 374

Query: 366 FSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVPMVK 425
               +    E   L   IR  R +L    G  +P   +  +  L        + E+    
Sbjct: 375 SLLSLINDLEGRRLTDQIRALRRSLAQEYGFVIPQVRILDNMRLPTQGYAIRIKEMETGA 434

Query: 426 ASV-VSHVAVERKALSVEPAHAIAGLVERDEQDWLWLAP----DDPLLDDPQLERFT--- 477
             V + H+      ++++PA     L     ++  +  P    ++ L ++     +T   
Sbjct: 435 GEVRLGHL------MAMDPAGRQVELPGEHMREPAFGLPATWIEEGLREEATFRGYTLVD 488

Query: 478 AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSRFSAVLQR 536
            ++++   + + +  +    L   E + +L  L   + +LV+EL   ++ ++    VLQ 
Sbjct: 489 PSTVLTTHLTEILKDNMADLLSYAEVQKLLKELGAEEKKLVEELVPSVVTVTTLQRVLQS 548

Query: 537 LASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEADG-LHAWLLS 595
           L  E V +R +  I+E L E   H      L ++ R  L  Q+  Q  + +G L    LS
Sbjct: 549 LLREKVSIRDLPAILEGLAEAAPHSSSVTTLVEHVRARLGRQLCWQNKDGEGALPIVTLS 608

Query: 596 PQTENILREALRQTQTGVFFALDDEHSAVLVSLLNQAFP-VRPKLKSVMLVAQDLRSPLR 654
           P+ EN   E+L         A+        +  +   F  +    ++ +L+   +  P  
Sbjct: 609 PEWENAFAESLIGQGEDKQLAMAPSRLQDFIRAVRDTFERIAMTGENPVLLTGPMTRPYV 668

Query: 655 TLLLEEF-NHVPVLSFAELGSASKVKVLGR 683
             ++E F     V+S  E+   ++++ LG+
Sbjct: 669 RSIIERFRGQTVVMSQNEIHPKARLRTLGQ 698