Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 699 a.a., Flagellar biosynthesis protein FlhA from Alteromonas macleodii MIT1002

 Score =  365 bits (936), Expect = e-105
 Identities = 240/693 (34%), Positives = 396/693 (57%), Gaps = 52/693 (7%)

Query: 21  LGA-VVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAFSSFPSILLLT 79
           LGA +V++AI+ + I+P+P +L+D+L + NI +S ++I++A+    P+ F  FP +LL+ 
Sbjct: 22  LGAPIVLLAIMGMVILPMPPFLLDVLFSFNIALSLVIILVAVLTQRPVDFGIFPLVLLIA 81

Query: 80  TMFRLALSIATTRLILLE-----QDAGHIVEAFGNFVVGGNLAVGMVIFLILTLVNFLVI 134
           T+ RLAL++A+TR++LL        AG ++EAFG  V+GGN AVG+V+F IL ++NF V+
Sbjct: 82  TVLRLALNVASTRVVLLYGHEGGDAAGKVIEAFGEVVIGGNYAVGIVVFAILLIINFKVV 141

Query: 135 TKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFGAMDGA 194
           T G+ R++EV+ARF+LDAMPGKQM+ID+DL AG ID  QAR +RE+++ E+  +G+MDGA
Sbjct: 142 TAGAGRISEVSARFTLDAMPGKQMAIDADLNAGYIDQDQARKRREEITAEADFYGSMDGA 201

Query: 195 MKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIPALLIS 254
            KFVKGDA+AGL I+++N++GG   GM QHGLS   +I +Y++LTIGDGL+AQIP+LL+S
Sbjct: 202 SKFVKGDAVAGLFIMLINIVGGLFIGMIQHGLSFGNAIEIYTILTIGDGLVAQIPSLLLS 261

Query: 255 LTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTGVFILI 314
           +   +I+TR           MG EI  Q+ +  ++  IAS  +    ++PGMP   F+  
Sbjct: 262 VATAIIVTR-----ENETQEMGKEIRGQLGNN-QALYIASGVLFVMGIIPGMPHIAFLGF 315

Query: 315 ALVTGSLGYYLMRQRQRQEQPAAETA--------EAVRPE--ENGSEDLRGFDP-SRPYL 363
           + +     Y+   Q  ++++ AAE          E+V PE  E G +D++  D       
Sbjct: 316 SFLIAGFAYW---QSVQEKRKAAEPKVPDNVVKDESVAPEVKELGWDDVQQVDTIGLEVG 372

Query: 364 LQFSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRFCVHEVPM 423
            +  P++    +  +L+  I+  R  L   +G  +PP  V + D+L   ++    + + M
Sbjct: 373 YRLIPLV-DKSQGGELLTRIKGVRKKLSQELGFLIPP--VHIRDNL---DLEPNTYTIAM 426

Query: 424 VKASVVSHVAVERKALSVEPAHAIAGLVERDEQ------DWLWLAPDDPLLDDPQLERFT 477
           +  ++   +    + L++ P      L  R  +      D +W+ P+    +  Q   +T
Sbjct: 427 LGVTIGDSIISHDEELAINPGQVFGKLEGRATKDPAFGLDAVWIKPNK--REHAQTLGYT 484

Query: 478 ---AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QRIMPLSRFSAV 533
              AA+++   + Q +  +  Q LG +E++ +L  L    P+LV+ L   I+PLS    V
Sbjct: 485 VVDAATVVATHLSQLLSNNAYQLLGHEEAQQLLDMLAKQHPKLVEGLVPDILPLSTVVKV 544

Query: 534 LQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSE-ADGLHAW 592
           LQ L  EGVP+R +R IV++L EYG   ++PD L    RIALK  I  + ++ A  +   
Sbjct: 545 LQTLLFEGVPIRDMRTIVQTLSEYGTRSQDPDVLVSAVRIALKRLIVQEITQGAKEIPVI 604

Query: 593 LLSPQTENILREALR---QTQTGVFFALDDE-HSAVLVSLLNQAFPVRPKLKSVMLVAQD 648
            L+P+ E +L ++L+   +   G+   L D+   ++  +   Q     P   +V+L +  
Sbjct: 605 TLAPELEQMLHQSLQAGGEDGAGIEPGLADKLQKSLQQASQQQELEGEP---AVLLTSGM 661

Query: 649 LRSPLRTLLLEEFNHVPVLSFAELGSASKVKVL 681
           LR  L   L      + VLS+ E+    ++K++
Sbjct: 662 LRPVLSRFLKYSVVGLHVLSYQEVPDDKQIKIV 694