Pairwise Alignments

Query, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

Subject, 695 a.a., flagellar biosynthesis protein from Agrobacterium fabrum C58

 Score =  340 bits (871), Expect = 2e-97
 Identities = 222/709 (31%), Positives = 385/709 (54%), Gaps = 62/709 (8%)

Query: 11  LLKVAQRAEVLG-AVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAF 69
           L KV+     +G A+ +++I+ +  +P+P  LVDI +A +I +S L++++AL++  PL F
Sbjct: 9   LPKVSPSMRDIGFALGIISILCVLFLPIPVMLVDIGLAFSIALSVLILMVALWIQRPLDF 68

Query: 70  SSFPSILLLTTMFRLALSIATTRLILLEQD-----AGHIVEAFGNFVVGGNLAVGMVIFL 124
           SSFP++LL+ TM RL+L+IATTR+IL   +     AG ++  F + V+ G+  +G+++FL
Sbjct: 69  SSFPTVLLIATMIRLSLNIATTRVILSHGNEGPTAAGGVIAGFSSLVMSGDFVIGLIVFL 128

Query: 125 ILTLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRE 184
           IL  VNF+VITKG+ R+AEV ARF+LDA+PGKQMSID+DL AG+ID  +A+ +R +L  E
Sbjct: 129 ILITVNFIVITKGATRIAEVGARFTLDAIPGKQMSIDADLSAGIIDEKEAQRRRRELEEE 188

Query: 185 SQLFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGL 244
           S  FG+MDGA KFV+GDAIAGLII  +N+ GG   G F+HG+   E+  ++  L++GDG+
Sbjct: 189 SSFFGSMDGASKFVRGDAIAGLIITAINVFGGIIIGYFRHGMPIGEAADVFVKLSVGDGI 248

Query: 245 IAQIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVVP 304
           ++QIPAL++SL AG++++R    G  G+++    +  Q++  P++ M++++ M   AV+P
Sbjct: 249 VSQIPALIVSLAAGLLVSR---GGTAGSTDQA--VINQLSGYPRALMVSAMLMGLLAVIP 303

Query: 305 GMPTGVFILIALVTGSLGYYLMRQ--------RQRQEQPAAETAEAVRPEENGSEDLRGF 356
           G+P   FI +  +     +Y+ RQ        RQ +E    +T EA   +++  + L+  
Sbjct: 304 GLPFVPFIFLGGIMAFGSWYIPRQAEAESALRRQEEENKVLQTTEA--EKDSVKQVLKTA 361

Query: 357 DPSRPYLLQFSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEMRF 416
           +       Q S  + G  +  +L   + + R       G  +P  +V  D  + +   + 
Sbjct: 362 EIELALGKQVSTRLLGAHQ--ELAFRVGKMRKKFATQYGFVVPEIKVSDDIMIPEKAYQI 419

Query: 417 CVHEVPMVKASV-VSHVAVERKALSV---------EPAHAI--AGLVERDEQDWLWLAPD 464
            VH   +  +++ V  V V   A            EPA  +    ++E   +D       
Sbjct: 420 RVHGTTIASSNLRVGDVLVVTGAGRKPSIPGDEIREPAFGMPAVSILETFTED------- 472

Query: 465 DPLLDDPQLERFTAASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-QR 523
              L           S+++  + + +  + PQ L  ++ K ++  L+    +L  E+   
Sbjct: 473 ---LKREGFHPIDNVSVVLTHLSEVIRNNLPQLLSYKDVKILIDRLDPEYKKLADEICSS 529

Query: 524 IMPLSRFSAVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQY 583
            M  S   AVL+ L +E V +R + LI+E++ E   H R+ + + ++ R+ +  Q+    
Sbjct: 530 HMSYSGLQAVLKLLLAERVSIRNLHLILEAVAELAPHVRKTEQIVEHVRVRMSQQLCGDL 589

Query: 584 SEADGLHAWLLSPQTENILREALRQTQTG--VFFALDDEH--------SAVLVSLLNQAF 633
           ++   L    L  + + +  +AL++ Q G  V F +D  H        S V+   +++  
Sbjct: 590 ADNGVLRVLRLGNKWDMVFHQALKRDQKGEIVEFDIDPRHLEEFSEQASKVIREFMDRGL 649

Query: 634 PVRPKLKSVMLVAQDLRSPLRTLLLEEFNHVPVLSFAELGSASKVKVLG 682
           P       V++ + + RS +R ++   F  +PVLS  EL    ++K+LG
Sbjct: 650 PF------VLVTSPETRSYVRMIIERLFATLPVLSHVELAKGLEIKILG 692