Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 59.7 bits (143), Expect = 3e-14
 Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 21/164 (12%)

Query: 20  LHLTDEQQK----KLRRFIHKRVLNPEDADDLLQLTYLEA---WRNRERFSGNATLSTWM 72
           +H  DEQ +    +LRRF      N   ADDL+Q T   A   W ++ R  G+  L  W+
Sbjct: 1   MHELDEQLRELIPRLRRFAVSLTRNASSADDLVQSTLERAIISWADK-RVEGD--LRAWL 57

Query: 73  CGIAQNLIRNHFRRMYAKPVHCEFDESLWHGQEDNRNLDWEFEVNRRL--EKTLSAIDHL 130
             I      +  RR        EF    + G++D +       V R +  + TL A D L
Sbjct: 58  FSILYRQFLDAHRRTRRYARMLEF----FTGRDDAQP-----SVERTVIAQSTLQAFDQL 108

Query: 131 PVEMRKTLYASLETDGSYQDTADALDIPIGTVRSRLSRAREQLK 174
             E R  L        SY++ A+ L++PIGTV SRLSRAR+ L+
Sbjct: 109 NTEQRALLLWVSVEGLSYKEIAEILEVPIGTVMSRLSRARQALR 152