Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 188 a.a., sigma-24 (FecI-like) protein from Sphingobium sp. HT1-2

 Score = 54.3 bits (129), Expect = 1e-12
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 22  LTDEQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIR 81
           L    Q  + R +   V +P++A D+ Q +++ A+    R+ G      WM  I  N   
Sbjct: 28  LVRRHQGWVHRLVRSHVGSPDEALDVTQASFVAAFSALSRYDGTRPFPVWMSRIVINKCH 87

Query: 82  NHFRRMYAKPVHCEFDESLWHGQ-----EDNRNLDWEFEVNRRLEKTLSAIDHLPVEMRK 136
           +  RR   + V   F  +L  G+     +D  + D   +  ++L + ++AI  LP  ++ 
Sbjct: 88  DWRRR---RAVRNFFSFALPLGEAEHIVDDAPSADRALDAEQQLAEAMTAIAALPASLKD 144

Query: 137 TLYASLETDGSYQDTADALDIPIGTVRSRLSRAREQL 173
           TL      + S  +TA+ L I    V +RL RAR +L
Sbjct: 145 TLILRTIDEKSEAETAEILGISQKAVETRLYRARARL 181