Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 66.2 bits (160), Expect = 4e-16
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 29  KLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIRNHF-RRM 87
           +LR F      N + ADDL+Q T L+AWR RER+        W    A  ++RNHF   M
Sbjct: 29  QLRAFARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAW----AFVILRNHFLSEM 84

Query: 88  YAKPVHCEFDESLWHGQEDNRNLDWEFEVNRRLEKTLSAIDHLPVEMRKTLYASLETDGS 147
             +    E+DE +    +       + E +  L   + A+  LPV  R+ L        S
Sbjct: 85  RRRRFVGEWDELV---ADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILVGAGGIS 141

Query: 148 YQDTADALDIPIGTVRSRLSRAREQLK 174
           Y++TA+ + + +GT++SR++RAR  L+
Sbjct: 142 YEETAEIIGVAVGTIKSRVARARVALE 168