Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score = 63.2 bits (152), Expect = 2e-15
 Identities = 52/164 (31%), Positives = 69/164 (42%), Gaps = 4/164 (2%)

Query: 21  HLTDEQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLI 80
           H   E   +LRRF       P  ADDL+Q T   A   R++      L  W+  I     
Sbjct: 7   HQWRELLARLRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFTILYRQF 66

Query: 81  RNHFRRMYAKPVHCEFDESLWHGQEDNRNLDWEFEVNRRLEKTLSAIDHLPVEMRKTLYA 140
            +  RR   + +H  +       + D+  +    E     +  L A   L  E R  L  
Sbjct: 67  LDGKRR---ERLHARWLSWFGRNEHDDEPVGDNLETIVLAQADLQAFARLTAEQRALLLL 123

Query: 141 SLETDGSYQDTADALDIPIGTVRSRLSRAREQLKRATH-NPKHP 183
                 SY++ A AL IPIGTV SRLSRAR  L+  T  NP+ P
Sbjct: 124 VSIEGLSYKEAAQALGIPIGTVMSRLSRARNALRELTEGNPQPP 167