Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 27  QKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQNLIRNHFRR 86
           Q K+   I + V +  +A D+ Q  +++A+R    F G++   TW+  IA N  +N+   
Sbjct: 30  QHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNYLVS 89

Query: 87  MYAKPVHCEF---DESLWHGQEDNRNLDWEFE--VNRRLEKTLS-AIDHLPVEMRKTLYA 140
              +P   +    D   + G    ++L+      +   +E T+   I  LP ++R  L  
Sbjct: 90  RGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSLLRDEIEGTVHRTIQQLPEDLRTALTL 149

Query: 141 SLETDG-SYQDTADALDIPIGTVRSRLSRAREQLKRA 176
             E DG SY+D A  +  P+GTVRSR+ RARE + +A
Sbjct: 150 R-EFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKA 185