Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 72.8 bits (177), Expect = 4e-18
 Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 15/171 (8%)

Query: 17  QFMLHLTDEQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIA 76
           +FM H+       +  F  +   + +DA DL+Q TYL+A+R    F        W+  I 
Sbjct: 21  EFMPHIDS-----MYNFAFRLTFDEDDAKDLVQDTYLKAYRFINSFEQGTNAKAWLFRIL 75

Query: 77  QNLIRNHFRRMYAKPVHCEFDESLWHGQEDNRNLDWEFEVNRRLE--------KTLSAID 128
           +N   N +R+   +P   ++ E   +   D+  +D+    + R++        +  +A++
Sbjct: 76  KNSFINEYRKKSKQPSKVDYQEVETYYNSDS--VDYNITSDLRVDAVKDMLGDEISNALN 133

Query: 129 HLPVEMRKTLYASLETDGSYQDTADALDIPIGTVRSRLSRAREQLKRATHN 179
            L V+ R  +        +Y++ A  LDIPIGTVRSRL RAR  LK   H+
Sbjct: 134 SLAVDFRTVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRARNLLKEKLHS 184