Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  249 bits (637), Expect = 9e-71
 Identities = 156/426 (36%), Positives = 222/426 (52%), Gaps = 32/426 (7%)

Query: 20  AVAAQDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPTGNG--YSEAWAQGLIGRFESGF 77
           A  A  P     E    ++L+RN++ + D R    SP+G+G  Y + WAQG IG   SGF
Sbjct: 14  ATLALWPALSHAEAPGWSLLSRNYFLHSDFR----SPSGSGQNYRQEWAQGFIGEVRSGF 69

Query: 78  TQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPEDNYSKVGGAAKLRVLD 137
           T+GTVG G+DA   +G+KLD G G SG     G+LP DS    E  YS  G A K+++ +
Sbjct: 70  TEGTVGVGIDAHGFLGLKLDGGRGHSGT----GLLPRDSDGRAESEYSSAGAALKMQLGN 125

Query: 138 TVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQGGRLTGMSQPAQSGMDK 197
           T ++ G++   TPV   GD R+ PE   G   +NT      LQ GR T  +    S    
Sbjct: 126 TQLRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHD 185

Query: 198 GFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQYYFG---SAARYPLNDE 254
            F+  Y     +  I   G  +  N     +LY+ +L++ W Q Y     +   + L   
Sbjct: 186 DFSG-YGATTHNRAISLAGATFAPNGPFGAALYAGQLENTWRQAYLNLNLAQGNWRL--- 241

Query: 255 VSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSLAVSHQRNNGDDDFDYLRQS 314
                D N YK  D G    GA D   +S       GA +L+V++Q+  GD  FD++   
Sbjct: 242 -----DGNLYKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVG-G 295

Query: 315 DSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTRYGKGSGADYSNANA--V 372
           DSI+L N+I+Y+DFN P E SW +RYDL+    G PGLS M RY  G G D S+A A   
Sbjct: 296 DSIYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGA 355

Query: 373 YMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVRSSAFES--DLEEVRV 430
           Y+ + G G      + WERDI+  YVVQ+G  KDLSL     + R++  ++  D++ + +
Sbjct: 356 YVNQYGDGG-----KHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDDIDRIYL 410

Query: 431 IVEYPI 436
           I+EYP+
Sbjct: 411 IIEYPL 416