Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  237 bits (605), Expect = 5e-67
 Identities = 155/423 (36%), Positives = 216/423 (51%), Gaps = 36/423 (8%)

Query: 29  GFIEGSTVNVLARNFYFNRDDRKGQSSPT-GNGYSEAWAQGLIGRFESGFTQGTVGFGLD 87
           GF+E ++  + ARN YFNRD R G SS + G    E WAQG I   +SG+TQG VG G+D
Sbjct: 33  GFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSGYTQGPVGVGVD 92

Query: 88  AFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPE----DNYSKVGGAAKLRVLDTVIKAG 143
           A  M G KLDS    S      G+LP  SS H      D Y+K+G AAK++V +TV+K G
Sbjct: 93  ALGMFGFKLDSSPADSNS----GLLP--SSGHDPRRSADQYAKMGLAAKVKVSNTVLKYG 146

Query: 144 DVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQGGRLTGMSQPAQSGMDKGFATF- 202
            + P  P++ Y D R+LP  F G    +  L  L     RL   +  A+   D+      
Sbjct: 147 SMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYT--ARDSTDRQDIRVH 204

Query: 203 -----YAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQYYFGSAARYPLNDEVSL 257
                YA   ++      G DY  N+  S     ++L++ + Q++ G  A  PL    SL
Sbjct: 205 CKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPL-PVGSL 263

Query: 258 FGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSLAVSHQRNNGDDDFDYLRQSDSI 317
             D    K+ D G  R G  D+  +S  LG  +G H L+   QR  G+    YL  S+  
Sbjct: 264 SADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPYLDGSNP- 322

Query: 318 FLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTRYGKGSGADYSNANAVYMRRD 377
           +L N  Q +DF + +ERSW VRYD D +A G+PGL+F TRY  G       ++       
Sbjct: 323 YLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGSS------- 375

Query: 378 GAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVRSS--AFESDLEEVRVIVEYP 435
                  + + WERD E  Y VQ+G  KD+S+RLR +T RS+   +  D++E RVIV Y 
Sbjct: 376 ------VEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYN 429

Query: 436 IAV 438
            ++
Sbjct: 430 FSI 432