Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  323 bits (829), Expect = 5e-93
 Identities = 185/446 (41%), Positives = 250/446 (56%), Gaps = 18/446 (4%)

Query: 6   YSLHLSLCAALPFTAVAAQDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPTGNG----- 60
           Y   LSL   L   A A  D  EGFI+G+ V+VL RNF+F++D R G  +   N      
Sbjct: 7   YRTALSLAILLASPAFADSDD-EGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQS 65

Query: 61  YSEAWAQGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSG-GKGSFGVLPVDSSN- 118
               W  G+I   +SGFT+GTVGFG+D   +VG+KLD G G  G G G  G++    SN 
Sbjct: 66  LHREWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNF 125

Query: 119 --HPEDNYSKVGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEG 176
              P+D+Y KVG A K+R  DT ++ GDV P +PV+   D R+LP++ RG    N SL+G
Sbjct: 126 DGEPKDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDG 185

Query: 177 LSLQGGRLTGMSQPAQSGMDKGFATFYAGPVDSPW-IGYFGGDYTVNKNLSFSLYSSRLK 235
           LSLQGG+L   S    S       T YAG +     + Y GGDY  N  L+  L+SSRL 
Sbjct: 186 LSLQGGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHSSRLD 245

Query: 236 DAWDQYYFGSAARYPLNDEVSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSL 295
           D W+Q +F      PL  E+SL    NYY+  D G+   G  DN+ WS   G+  GAH  
Sbjct: 246 DVWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAHGF 305

Query: 296 AVSHQRNNGDDDFDYLRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFM 355
            +S+ R +GD  FDY+  +  + L+ + Q SDFN+P ER+W  RYD D    G+PGLS  
Sbjct: 306 KLSYTRIDGDTPFDYVWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLSLT 365

Query: 356 TRYGKGSGADYSNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQAT 415
            RY +G+  D + A   Y   +G      D R WER++   YV+Q+G  KDLS  L QAT
Sbjct: 366 ARYVRGTDIDGTRAGGAYSYFNGT----EDGRHWERNLWLKYVLQSGPAKDLSFNLMQAT 421

Query: 416 VR---SSAFESDLEEVRVIVEYPIAV 438
            R       ES+++E+R+IV+YP+ +
Sbjct: 422 HRVGGDHVAESNVDELRLIVQYPLDI 447