Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 417 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  231 bits (590), Expect = 2e-65
 Identities = 146/432 (33%), Positives = 216/432 (50%), Gaps = 34/432 (7%)

Query: 12  LCAALPFTAVAAQDPPEGFIEGSTVNVLARNFYFNRD--DRKGQSS---PTGNGYSEAWA 66
           LC  LP    A      GFIE S + +  RN YFN +  D +G S+    T       WA
Sbjct: 14  LCGWLPVAGAA------GFIEDSKLKLQLRNVYFNENFRDEQGMSARAAATAKSERVEWA 67

Query: 67  QGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPEDNYSK 126
           QG +  ++SGFTQGT+G G+DA  ++GV+LDSG GRSG     G+LPV       D ++ 
Sbjct: 68  QGFLLDYQSGFTQGTLGLGVDAMGLLGVRLDSGRGRSGT----GLLPVHDDGRAADEFAS 123

Query: 127 VGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQGGRLTG 186
            G  AK R+  TV+K G + P TPV+ Y D+R+LP++++G    +T ++ L+L  G L  
Sbjct: 124 AGITAKARLGSTVVKHGTLLPKTPVLVYNDARLLPQTYQGTQLTSTDIDNLTLTAGHLDR 183

Query: 187 MSQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQYYFGSA 246
             Q   S     +   Y GP    +  + G DY V+K L  S +   L+  + Q + G  
Sbjct: 184 FKQRDSSDSTGLYLDGYGGPASGDF-SFAGADYAVSKQLRLSYFHGELEHFYRQDFAGLV 242

Query: 247 ARYPLNDEVSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSLAVSHQRNNGDD 306
              PL   V L  D  Y+K+ D G    G  DN+++S +L      H++   +Q  +G+ 
Sbjct: 243 HDLPLGGGV-LTTDLRYFKSRDSGTAYGGGIDNDMFSGQLSYAHSGHTVGAGYQVLDGEA 301

Query: 307 DFDYLRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTRYGKGSGADY 366
              Y+    +++  +++    F   +E++WM  Y  +  A G+PGL+FMTRY  G     
Sbjct: 302 GLPYI-SGATVYSFSNVGIGKFIEEEEKTWMASYAYNFAAAGVPGLTFMTRYLSGDNG-- 358

Query: 367 SNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVRSSAFESDLE 426
                   R  G G      + WERD E +YVVQ G LK L ++LR    RS  F    +
Sbjct: 359 --------RSGGEG-----IKEWERDAEIAYVVQGGPLKGLGVKLRNYVYRSD-FARGRD 404

Query: 427 EVRVIVEYPIAV 438
             R+ + Y IA+
Sbjct: 405 SNRLYLTYDIAI 416