Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  306 bits (784), Expect = 8e-88
 Identities = 184/451 (40%), Positives = 254/451 (56%), Gaps = 42/451 (9%)

Query: 1   MRIRHYSL-HLSLCAALPFTAVA-AQDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPTG 58
           MR+  +S+  L++ A     A+A AQD  +GFIE S ++V  R  YF+RD R  +    G
Sbjct: 1   MRVMKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEG---G 57

Query: 59  NGYSEAWAQGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSN 118
               E    G +G FESGFTQGTVG G+DA  M+G+KLDSG GR+G     G+ P  S  
Sbjct: 58  QSRREETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGT----GLFPTGSDG 113

Query: 119 HPEDNYSKVGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLS 178
             +D+YSK GGA K R+ DTV+K GD F   PV A  DSR+LPE  +G    +  +EGL+
Sbjct: 114 RSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLT 173

Query: 179 LQGGRLTGMSQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAW 238
           L  G  T ++   Q+  D  F    A  V        GG Y    NLS SLY S+++D W
Sbjct: 174 LHAGHFTSLTAQEQTNRD-SFGLKEANVV--------GGTYAFTDNLSTSLYYSKVEDYW 224

Query: 239 DQYYFGSAARYPLNDEVSLFGDFNYYKAVDEGKKRLGAF-----DNNIWSARLGVKVGAH 293
            +YY       P++D   L  DFN Y    EG     AF     DN  +S      +GAH
Sbjct: 225 RKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAH 284

Query: 294 SLAVSHQRNNGDDDFDY-LRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGL 352
           +  +++Q+  GD D+ Y +    +IFL NS+  SDFN+  E+SW  RYDL+   +GIPGL
Sbjct: 285 TFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGL 344

Query: 353 SFMTRYGKGSGADYSNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLR 412
           +FMTRY +GS A+ +                ++ + WERD++  YV+Q G  KDLS R+R
Sbjct: 345 TFMTRYVRGSDANVAGT--------------SNGKEWERDVDIKYVLQEGPAKDLSFRVR 390

Query: 413 QATVRSS---AFES-DLEEVRVIVEYPIAVL 439
           QAT RSS    ++S  ++E+R+IVEYP+++L
Sbjct: 391 QATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421