Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 412 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  218 bits (555), Expect = 3e-61
 Identities = 139/433 (32%), Positives = 214/433 (49%), Gaps = 33/433 (7%)

Query: 8   LHLSLCAALPFTAVAAQDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPTGNGYSEAWAQ 67
           L   + A LP T++AA     GF+E     +  RNFY NR+     S+P     +E W Q
Sbjct: 12  LGAGVIAGLPGTSLAA-----GFVEDGKATLGLRNFYINRNFTN-PSNPQSK--AEEWTQ 63

Query: 68  GLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPEDNYSKV 127
             I    SGFT+G +GFG+D   +  VKLD G    GG     +LP      P D+Y ++
Sbjct: 64  SFILDARSGFTEGPIGFGVDVLGLWSVKLDGG----GGTYGTALLPRHDDGRPADDYGRL 119

Query: 128 GGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQGGRLTGM 187
             A K R+  T +K G+  P+ P++   D R LP++FRG    +  + GL+L GG+  G 
Sbjct: 120 AVAGKARISKTELKIGEWMPVLPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGN 179

Query: 188 SQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKN-LSFSLYSSRLKDAWDQYYFGSA 246
           S    + M+      Y G V S    + GG+Y  N++     L+++ LKD + Q Y   +
Sbjct: 180 SPRNDASMED---MSYGGGV-SDRFNFVGGEYKFNQDRTQVGLWNAVLKDVYQQQYLQLS 235

Query: 247 ARYPLNDEVSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSLAVSHQRNNGDD 306
              P+ D  +L  +  Y+   ++G +R G  DN  +S     K G  +  V  Q+ +GD 
Sbjct: 236 HSQPVGD-WTLGANLGYFHGDEDGSERAGQLDNKTYSGMFSAKYGGSTFWVGLQKVDGDT 294

Query: 307 DFDYLRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTRYGKGSGADY 366
                  S     N+S   S F++  ERSW VR+D +    G+PGL+ M RY  G     
Sbjct: 295 WMRVNGTSGGTLANDSYN-SSFDNANERSWQVRHDFNFVTVGVPGLTLMNRYISG----- 348

Query: 367 SNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVRSSAFESDLE 426
                    RD     +TD + W R+ E +YV+Q+G  KDLS++ R +++R     ++ +
Sbjct: 349 ---------RDVHSGGVTDGKEWVRETELAYVIQSGAFKDLSVKWRNSSIRRDYSNNEFD 399

Query: 427 EVRVIVEYPIAVL 439
           E R+I  YP+++L
Sbjct: 400 ENRLIFNYPLSLL 412