Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 459 a.a., glycine-glutamate dipeptide porin from Pseudomonas putida KT2440

 Score =  221 bits (563), Expect = 4e-62
 Identities = 149/442 (33%), Positives = 227/442 (51%), Gaps = 30/442 (6%)

Query: 16  LPFTAVAAQDPPE--GFIEGSTVNVLARNFYFNRDDRKGQSSPTGNGYS----------- 62
           LP T  ++ +  +  GFI+G +++   RN+Y      +   +P    Y            
Sbjct: 30  LPLTLKSSSEQAQASGFIDGQSLSGSTRNWYARE---RAARAPLWKYYKNDGTRHDTHSR 86

Query: 63  EAWAQGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPED 122
           E W QG I  + SGFTQGTVGF ++A     + L        G  +  +    S   P  
Sbjct: 87  ENWVQGTILNYSSGFTQGTVGFAVEAAGYNAIALQQSREAIAGPNNRTL--THSDGDPVG 144

Query: 123 NYSKVG-GAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQG 181
            +SK+G G  K RV +T +  G     TP++AY  +R LP SF+G    +   + LS+  
Sbjct: 145 QWSKLGLGNIKARVSNTTLTLGRQSVDTPMIAYIGNRALPSSFQGAFLHSAEFDNLSIDL 204

Query: 182 GRLTGMSQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQY 241
           G    +S   +  + K  + + A  V++      G +Y   K+LS SLY+++++D W+QY
Sbjct: 205 GTFDRVSPRTEQSLSKFRSEYSATGVETDRASTAGINYQPFKSLSTSLYATKVEDFWNQY 264

Query: 242 YFGSAARYPLNDE--VSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSLAVSH 299
           YFG  A + L D   +SL    NYYK VD G +++G  DN+ +S  LG+   AH+L+ S 
Sbjct: 265 YFG--ANHVLGDSAVLSLSTGLNYYKTVDAGSQKMGKIDNDTYSLSLGLTHQAHTLSASW 322

Query: 300 QRNNGDDDFDYLRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTRYG 359
           Q+ NG++ FDYL +++ IFL NS+  SDFN P E+S  + Y L+M  +G+PGL F     
Sbjct: 323 QQVNGNEYFDYLHETNGIFLANSL-LSDFNGPNEKSLQLSYVLNMAPYGVPGLKFNLYNA 381

Query: 360 KGSGADYSNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVRSS 419
           +G G D ++    Y       N L  +  +E  I  SY +Q+G LKD S+R    T R+S
Sbjct: 382 RGWGIDGTH----YRGTAYDVNGLDGETHYEWGIGTSYALQSGPLKDTSIRATYTTHRAS 437

Query: 420 AFESD--LEEVRVIVEYPIAVL 439
             + D  L+E RV+   P  +L
Sbjct: 438 KAQGDGSLDEFRVVTTIPFNIL 459