Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  322 bits (825), Expect = 1e-92
 Identities = 185/454 (40%), Positives = 261/454 (57%), Gaps = 35/454 (7%)

Query: 4   RHYSLHLSLCAALPFTAVAAQDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPTGNGYSE 63
           R   L ++L A +PF A A +D  +GFIEGS+ N+  RN YFNRD+       T      
Sbjct: 6   RFTPLFIALTATIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRDNHNAGVRDT-----R 60

Query: 64  AWAQGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPE-- 121
            W QG + RFESG+T G VGFGLDA AM+G+KLD G G +G      +LP    +  E  
Sbjct: 61  EWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTS----ILPEHIKDDGELG 116

Query: 122 ---DNYSKVGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLS 178
               ++S  G A KL+  DT +KAGD+F   PV+A G++R+LP++FRGV+  NTS++GL 
Sbjct: 117 AAPHSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLL 176

Query: 179 LQGGRLTGMSQPAQSGMDKGFATFYAGPVD----SPWIGYFGGDYTVNKNLSFSLYSSRL 234
           L+GG+++      QSG  +   T+Y G +D    S  + + G  ++  ++++ +LY++ L
Sbjct: 177 LEGGQVSFTHPYNQSG-HRRIDTYY-GSLDEHDKSKHLNWAGASWSGTEHITANLYAAEL 234

Query: 235 KDAWDQYYFGSAARYPLNDEVSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHS 294
           KD W+QYY      Y +ND VSL    ++Y   D G+  LG  DNN +S    V  G HS
Sbjct: 235 KDIWNQYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQALLGKIDNNTYSVHFTVNAGFHS 294

Query: 295 LAVSHQRNNGDDDFDYLRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSF 354
           +  ++QR NG+  FDY+   DS++L+NS  YSDFN+P ERSW ++Y  D    G+PGLS 
Sbjct: 295 VTAAYQRVNGNTPFDYINLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFAGVGVPGLST 354

Query: 355 MTRYGKGSG----ADYSNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLR 410
              Y +G      A     +  Y R DG      +   WERD++  YV Q G LKDLS+ 
Sbjct: 355 SLSYSRGEADLTKATQDTTHYDYYREDG-----KNAMHWERDLDVKYVFQEGDLKDLSVL 409

Query: 411 LRQATVRSSA------FESDLEEVRVIVEYPIAV 438
           +R AT R S         SD +E+RVIV+YP+ V
Sbjct: 410 VRYATHRGSQGYASIDSNSDNDELRVIVDYPLNV 443