Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  241 bits (614), Expect = 4e-68
 Identities = 164/459 (35%), Positives = 224/459 (48%), Gaps = 56/459 (12%)

Query: 10  LSLCAALPFTAVAAQDPPE----GFIEGSTVNVLARNFYFNRDDRKGQSSPTGNGYSEAW 65
           +SL A     A  AQ   +    GFIE S  NVL RN Y NRD + G            W
Sbjct: 6   ISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQI------EW 59

Query: 66  AQGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSSNHPED--- 122
            Q  I  F SGFTQGTVG G+DAF +  V+LD G G +GG G     P +++N   +   
Sbjct: 60  GQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASS 119

Query: 123 --NYSKVGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGLSLQ 180
             N ++ G A K R+ +TV+K GD  P  PV+ Y D+R+LPESF G    +  ++GL L 
Sbjct: 120 PHNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLELN 179

Query: 181 GGRLTGMSQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDAWDQ 240
            GR T  ++ +    D G             I   GG Y    N + SLY++  +D   +
Sbjct: 180 AGRFTQEARKSAERRDGG---------GLKSINVLGGSYKFTDNFTASLYTADNEDVMKK 230

Query: 241 YYFGSAARYPLNDEVSLFGDFNYYKAVDEGK----KRLGAFDNNIWSARLGVKVGAHSLA 296
           +Y G    +P+  + SL  DFN YK+    K      L    N IWS       GAHS  
Sbjct: 231 HYLGLNYVFPIASDQSLTLDFNGYKSDINNKYVKAAGLNGDSNTIWSLAATYAYGAHSFT 290

Query: 297 VSHQRNNGDDDFDY-LRQS--------DSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAF 347
           ++HQR+ G   ++Y   Q+         +I+L NS  +SDFN+  ERSW + Y LD  A+
Sbjct: 291 LAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLANS-YWSDFNAEDERSWQLGYGLDFGAY 349

Query: 348 GIPGLSFMTRYGKGSGADYSNANAVYMRRDGAGNPLTDQRRWERDI--EASYVVQAGRLK 405
           GIPGL++   Y  G   +  N            NP       ER+I  +  YVVQ G  K
Sbjct: 350 GIPGLTYKLAYVVGDNINTRN----------VANPQGFGEGKEREIFNQIRYVVQDGPAK 399

Query: 406 DLSLRLRQA------TVRSSAFESDLEEVRVIVEYPIAV 438
           DLS++LR +       V+ + +  D  EVRV VEYPI++
Sbjct: 400 DLSIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438