Pairwise Alignments

Query, 439 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  620 bits (1599), Expect = 0.0
 Identities = 294/442 (66%), Positives = 363/442 (82%), Gaps = 11/442 (2%)

Query: 8   LHLSLCAALPFT---AVAAQDPPEGFIEGSTVNVLARNFYFNRDDRKGQSSPT------- 57
           L+L+  +AL  +   +  A+D PEGFIEGS++ VL RNFYFNRD+R   ++PT       
Sbjct: 7   LYLAAVSALSGSYAISAQAEDKPEGFIEGSSLTVLNRNFYFNRDNRDS-TAPTYNSGKGN 65

Query: 58  GNGYSEAWAQGLIGRFESGFTQGTVGFGLDAFAMVGVKLDSGTGRSGGKGSFGVLPVDSS 117
            NGYSEAWA  +I +F SGFTQGTVGFG+DAFAM+G+KLD+G GR+GG+ SF VLPVD+ 
Sbjct: 66  TNGYSEAWAHAIISKFNSGFTQGTVGFGVDAFAMIGLKLDTGDGRNGGRSSFDVLPVDNK 125

Query: 118 NHPEDNYSKVGGAAKLRVLDTVIKAGDVFPLTPVVAYGDSRVLPESFRGVTAQNTSLEGL 177
               D Y+KVGGAAK+R+ DT++K GDVFP TPVVA GDSR+LPESFRGVT +NTS++GL
Sbjct: 126 GEARDEYTKVGGAAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFRGVTVENTSIQGL 185

Query: 178 SLQGGRLTGMSQPAQSGMDKGFATFYAGPVDSPWIGYFGGDYTVNKNLSFSLYSSRLKDA 237
           +LQGGRL  MSQP  S ++  F TFY GPV+SPWIGY GGDY++N N + S+Y+S+LKD 
Sbjct: 186 TLQGGRLHAMSQPVSSNLNDNFVTFYGGPVNSPWIGYGGGDYSINDNWTVSVYASQLKDV 245

Query: 238 WDQYYFGSAARYPLNDEVSLFGDFNYYKAVDEGKKRLGAFDNNIWSARLGVKVGAHSLAV 297
           W+QYY G++  YPL+D+++L G FNYYKAVDEGKKRLG FDNNIWSA++GV+ GAH+LA+
Sbjct: 246 WNQYYAGTSVVYPLSDDLALIGGFNYYKAVDEGKKRLGEFDNNIWSAKVGVRYGAHTLAL 305

Query: 298 SHQRNNGDDDFDYLRQSDSIFLNNSIQYSDFNSPKERSWMVRYDLDMQAFGIPGLSFMTR 357
           SHQRNNGDDDFDYLRQSDSIF++NSIQYSDFNSPKERSWM+RYDL+  ++GIPGL+FMTR
Sbjct: 306 SHQRNNGDDDFDYLRQSDSIFVDNSIQYSDFNSPKERSWMLRYDLNFTSYGIPGLTFMTR 365

Query: 358 YGKGSGADYSNANAVYMRRDGAGNPLTDQRRWERDIEASYVVQAGRLKDLSLRLRQATVR 417
           Y +GSGADYSNAN  YMR D  GNPL +Q+RWERD+E  YVVQ G  KDLS RLRQAT R
Sbjct: 366 YARGSGADYSNANQFYMRTDDNGNPLDNQKRWERDVEVKYVVQTGPAKDLSFRLRQATTR 425

Query: 418 SSAFESDLEEVRVIVEYPIAVL 439
           ++AFESDL+E RVI+EYP+++L
Sbjct: 426 ATAFESDLDETRVIIEYPLSIL 447