Pairwise Alignments

Query, 406 a.a., type I secretion protein TolC from Pseudomonas simiae WCS417

Subject, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

 Score =  103 bits (258), Expect = 8e-27
 Identities = 103/411 (25%), Positives = 166/411 (40%), Gaps = 50/411 (12%)

Query: 12  GVLWVVASAAQAQTLTLDSALQTAFANNPDLAAAQWEIDIAQGGRQQ-------AGLIPN 64
           G++W   +   A T  L S  Q A  NN DLAAA+     AQ G Q+       AGL+PN
Sbjct: 17  GMVWAAEAPLSANT-DLVSVYQEAVDNNADLAAAR-----AQYGAQKEVVPQARAGLLPN 70

Query: 65  PVASWDVEDTR-----------RDSRTTSIKISQALELGGKRGARIDVASRVQDAAALTL 113
                D+ + R           RD+ +    +SQ L     R  ++  A    + AAL L
Sbjct: 71  LTGGADINNVRTQIDTPAATANRDAHSWRATLSQPL-FRADRWFQLQAAEATNEQAALQL 129

Query: 114 EQRRNSLRAEVIDNYYGALRAQERLDLAQRSMTLAERGLVVANGRVTAGKASPVEATRAQ 173
                +L  +  +NY+  LRAQ+ L   +      +R L  +N R   G +   +  ++Q
Sbjct: 130 SATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSNERFDVGLSDKTDVLQSQ 189

Query: 174 VQLSEIRLERDRAQMGLTDAYRRLAASTGSAAPNFQAVATRNPSTLAVPSATQLLARL-- 231
                 R  R  AQ  + DA+  L   T     + Q +    P    +P+  +       
Sbjct: 190 ASYDTARANRILAQRQVEDAFEALITLTNRQYNSIQGIVHTLPVLPPLPNDAKAWVETAG 249

Query: 232 EQTAELRLAELSILQYEASIGLEKAQRIPDLDV------------------SIGSQYDAS 273
            Q   L  +  ++   E ++   KA   P LD                   + G+ Y   
Sbjct: 250 RQNLNLLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDNDALGFSNPNAFGTPYRGD 309

Query: 274 VRERVSLVGVSMPIPLFNRNQGNVLAATRRADQARDLRNATELRLRTETRQAVDLWQSAN 333
           V +R   + +S+PI         V  +  R  Q    R     ++   TR   +L ++ N
Sbjct: 310 VEQRTIGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLRRQVVENTR---NLHRAVN 366

Query: 334 TEVRVF--NQQILPAAQSAVDSATRGFEMGKFSFLDVLDAQRTLIAARTQY 382
           T+V      +Q + + QSAV++   G+++G  + +DVLD+QR L A+   Y
Sbjct: 367 TDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNY 417



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 16/114 (14%)

Query: 288 PLFNRNQGNVLAATRRADQARDLR-NATELRLRTETRQ-------AVDLWQSANTEVRVF 339
           PLF  ++   L A    ++   L+ +ATE  L  ++ +       A D   S   E   F
Sbjct: 105 PLFRADRWFQLQAAEATNEQAALQLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAF 164

Query: 340 NQQILPAAQSAVDSATRGFEMGKFSFLDVLDAQRTLIAARTQYLTATAQATDAW 393
            +Q+        D +   F++G     DVL +Q +   AR   + A  Q  DA+
Sbjct: 165 KRQL--------DQSNERFDVGLSDKTDVLQSQASYDTARANRILAQRQVEDAF 210