Pairwise Alignments

Query, 406 a.a., type I secretion protein TolC from Pseudomonas simiae WCS417

Subject, 472 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 113/407 (27%), Positives = 168/407 (41%), Gaps = 64/407 (15%)

Query: 28  LDSALQTAFANNPDLAAAQWEIDIAQGGRQQ--AGLIPNPVAS---------------WD 70
           L+   Q     NPDLAAA    D +Q    Q  AGL P   AS                D
Sbjct: 67  LNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSDSRPLRGD 126

Query: 71  VEDTRRDSRTTSIKISQALELGGKRGARIDVASRVQDAAALTLEQRRNSLRAEVIDNYY- 129
            + +  +S T    +S  L+L GK   ++        A+   L   R SL+ ++   Y  
Sbjct: 127 TQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQLATLYVQ 186

Query: 130 -GALRAQERLDLAQRSMTLAERGLVVANGRVTAGKASPVEATRAQVQLSEIRLERD--RA 186
              L AQ R+    RS+    + L +   R     AS ++ TRAQ QL+E + + D  R 
Sbjct: 187 LNGLDAQARI--LDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWDEIRG 244

Query: 187 QMGLTDAYRRLAASTGSAAPNFQAVATRNPSTLAVPSATQLLAR--LEQTAELRLAELSI 244
           Q  LT+    +    G AA +F    + +P  +++P     L    L++  ++  AE  +
Sbjct: 245 QRNLTE--HAIGELVGVAASDFS--LSPSPQLISLPGIPSQLPSHLLQRRPDIAAAERRV 300

Query: 245 LQYEASIGLEKAQRIPDLDVS--IGSQYDA-----SVRERVSLVGVSMPIPLFNRNQGNV 297
               A+IG+ KA   PD  ++  IG Q        S   R   +G  + +P+F+   G  
Sbjct: 301 FAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFD---GGR 357

Query: 298 LAATRRADQARDLRNATELRLRTETRQAV-----------DLWQSANTEVRVFNQQILPA 346
           L+A  R  QA+          R++  +AV           DL Q A  E     Q    A
Sbjct: 358 LSANER--QAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDE-----QAAADA 410

Query: 347 AQSAVDSATRGFEMGKFSFLDV-------LDAQRTLIAARTQYLTAT 386
           AQ     A   ++ G  S+LDV       L AQRTL A +T+ L A+
Sbjct: 411 AQHTQSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQAS 457