Pairwise Alignments

Query, 406 a.a., type I secretion protein TolC from Pseudomonas simiae WCS417

Subject, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 9e-26
 Identities = 99/408 (24%), Positives = 170/408 (41%), Gaps = 44/408 (10%)

Query: 12  GVLWVVASAAQAQTLTLDSALQTAFANNPDLAAAQWEIDIAQG--GRQQAGLIPNPVASW 69
           GV+W     +  +T  L S  Q A  NN DLAAA+ +    +    + +AGL+PN  A  
Sbjct: 17  GVVWAADVPSTVKT-DLVSVYQEAVDNNADLAAARADYGARREVVPQARAGLLPNLSAGA 75

Query: 70  DVEDTR-----------RDSRTTSIKISQALELGGKRGARIDVASRVQDAAALTLEQRRN 118
           ++ +TR           R   + S  ++Q +     R  ++  A  V + AAL L     
Sbjct: 76  EMMNTRTKLDEPSITSNRSGNSWSATLAQPI-FRADRWFQLQAAEAVNEQAALELSATEQ 134

Query: 119 SLRAEVIDNYYGALRAQERLDLAQRSMTLAERGLVVANGRVTAGKASPVEATRAQVQLSE 178
           +L  +   NY+  LRAQ+ L   +      +R L  +N R   G +   +  ++Q     
Sbjct: 135 NLILQTAQNYFAVLRAQDNLAATKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDT 194

Query: 179 IRLERDRAQMGLTDAYRRLAASTGSAAPNFQAVATRNPSTLAVPSATQLLARL--EQTAE 236
            R  R  A+  + DA+  L   T     + Q V    P  +  P+  +        Q   
Sbjct: 195 ARANRIIAERQVQDAFEALVTLTNREYTSIQGVVHSLPVQVPTPNDAKAWVETAGRQNLN 254

Query: 237 LRLAELSILQYEASIGLEKAQRIPDLDV------------------SIGSQYDASVRERV 278
           L     ++   E ++   KA   P LD                    +G +Y   V +  
Sbjct: 255 LLATNYAVSAAEETLRQRKAGHAPTLDAVAKYQKGDNDSLGFTNPSQLGVRYSGDVEQ-- 312

Query: 279 SLVGVSMPIPLFN--RNQGNVLAATRRADQARDLRNATELRLRTETRQAVDLWQSANTEV 336
           + VG+ + IP+++       V  A +R  Q+   R +   ++   TR   +L ++ NT+V
Sbjct: 313 TSVGLQLNIPIYSGGLTSSQVREAYQRLSQSEQQRESLRRQVVENTR---NLHRAVNTDV 369

Query: 337 RVF--NQQILPAAQSAVDSATRGFEMGKFSFLDVLDAQRTLIAARTQY 382
                 +Q + + QSA+++   G+++G  + +DVLDAQR L  +   Y
Sbjct: 370 EQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYTSVRDY 417



 Score = 30.8 bits (68), Expect = 9e-05
 Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 24/207 (11%)

Query: 203 SAAPNFQAVATRNPSTLAVPSATQLLARLEQTAELRLAELSILQYEASIGLEKAQRIPDL 262
           S A N    A   PST+     +     ++  A+L  A          +   +A  +P+L
Sbjct: 12  SCASNGVVWAADVPSTVKTDLVSVYQEAVDNNADLAAARADYGARREVVPQARAGLLPNL 71

Query: 263 DVSIGSQYDASVRERVSLVG--------VSMPIPLFNRNQGNVLAATRRADQARDLR-NA 313
                     +  +  S+           ++  P+F  ++   L A    ++   L  +A
Sbjct: 72  SAGAEMMNTRTKLDEPSITSNRSGNSWSATLAQPIFRADRWFQLQAAEAVNEQAALELSA 131

Query: 314 TELRLRTETRQ-------AVDLWQSANTEVRVFNQQILPAAQSAVDSATRGFEMGKFSFL 366
           TE  L  +T Q       A D   +   E   F +Q+        D +   F++G     
Sbjct: 132 TEQNLILQTAQNYFAVLRAQDNLAATKAEEAAFKRQL--------DQSNERFDVGLSDKT 183

Query: 367 DVLDAQRTLIAARTQYLTATAQATDAW 393
           DVL +Q +   AR   + A  Q  DA+
Sbjct: 184 DVLQSQASYDTARANRIIAERQVQDAF 210