Pairwise Alignments

Query, 908 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 941 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  141 bits (355), Expect = 2e-37
 Identities = 141/560 (25%), Positives = 234/560 (41%), Gaps = 66/560 (11%)

Query: 392 GQVLGVGDNRRWIGFMLDISDIKNQQLQAAAAHARLDNLIASSPAVIYVQRYVSGALHPA 451
           G+V+G+      +G  LDI++ K  +        R    I ++  VI+  R+  G +   
Sbjct: 257 GEVVGL------VGTSLDITERKAIEASHREIEERYRLAIGATSDVIWDWRFADGHV--- 307

Query: 452 FFSDSLLPLLGWTLADCNHDSLASLIHPQDRELYFERSRQLLREGSVR--SRYRLRDKQG 509
            ++++L    G      +       IHP DR    E    ++  G       YR R   G
Sbjct: 308 IWNEALGTRFGHVQEQTSAQWWLDHIHPDDRARIDESIHAVIDHGGSNWTDEYRFRRADG 367

Query: 510 HYHWLLDEAKLLRDDLGLPLEAVGLWLDVTDATLAAEHIKQSEERYRILVEDSPAMICRY 569
            + ++LD   +LR D G P+  +G  LD+T+   A   +  SEER R+  E   A I  +
Sbjct: 368 SHAFVLDRGTVLRSDDGAPMRMIGAMLDLTERKAAEAALAASEERLRLATE--AADIGLW 425

Query: 570 RPDLT---LTFGNTPLANYLECPPEQLPGLNLGDWLSDEQRQAFAHRIGQLSPEFPVSTA 626
             DL    L +     A +   P   +   +    L  +   A        +     +  
Sbjct: 426 DVDLVEDVLIWPARTKAMFGISPDVPVSMRDFYAGLHPDDLDATTAAFAAAADPGQRALY 485

Query: 627 EISLELPGREHA---WWVWSDRGVFDEQ------GALVEVQA------------------ 659
           ++     G+E     W     RGVFD+       G  ++V A                  
Sbjct: 486 DVEYRTVGKEDGIVRWVAAKGRGVFDDVRCVRVVGVAIDVTARKADEALLHELNERLELR 545

Query: 660 VGRDNTEVRRSQQQLTQSAKMATLGEMATGLAHEINQPLNVMRMAIVNVLKRLSNGDAQI 719
           V ++  E  +++  L QS KM ++G++  G+AH+ N  L V+  ++  + +RL + D + 
Sbjct: 546 VAQEVAERTKAEDALRQSQKMESVGQLTGGIAHDFNNMLAVVVGSLDLLTRRLGDDDPRA 605

Query: 720 DYLTEKLQRIDTQVQRAARVVDHMRVFGRRSEIEQQPFDPSQAVEGTLSLLGDGLRGKGV 779
               +         +RAA++   +  F R+  ++ +  D ++ V+G   +L   L    +
Sbjct: 606 RRYVDSAM---DGARRAAQLTQRLLAFSRQQPLKPESIDANKLVDGMSDMLRHTL--PDI 660

Query: 780 DVRITPADFTVQVKGHVDQLEQVLINLMVNARDALLSKRQKDPEFRPWIAVHCEHDSRH- 838
                 A    +     +QLE V++NL VNARDA+    +   E       +C  DSR+ 
Sbjct: 661 QPETVLAGGLWRAFADPNQLENVILNLAVNARDAMAGGGKLIIE-----TANCYLDSRYA 715

Query: 839 -----------VRIWVEDNGDGIDPRLLERIFEPFFTTKPIGVGTGLGLSVSYGIVENMG 887
                      V I V D G G+   ++ R F+PFFTTK +G GTGLGLS  YG V+  G
Sbjct: 716 EELIGVPAGEYVMIAVSDTGSGMPQEVVARAFDPFFTTKEVGRGTGLGLSQVYGFVKQSG 775

Query: 888 GRLSV-ANAEQGARFCVELP 906
           G + + +   +G    V LP
Sbjct: 776 GHVRIYSEVGEGTTVKVYLP 795



 Score = 47.8 bits (112), Expect = 3e-09
 Identities = 62/282 (21%), Positives = 109/282 (38%), Gaps = 22/282 (7%)

Query: 417 QLQAAAAHARLDN----LIASSPAVIYV-------QRY-VSGALHPAFFSDSLLPLLGWT 464
           +LQA  A ARLD     L  ++ A++          R+ V  A   AF  D      G T
Sbjct: 13  ELQAMVARARLDGDRLKLALAAGAIVGTWFCDVPADRFTVDEAFAEAFGLDPATGRDGVT 72

Query: 465 LADCNHDSLASLIHPQDRE-LYFERSRQLLREGSVRSRYRLRDKQGHYHWLLDEAKLLRD 523
           L     + + +  HP DR  L       L + G    +YR+    G Y W+  +  ++ D
Sbjct: 73  L-----EKIVTTAHPDDRSGLQRAIEDALDKGGRYAHQYRVLRADGQYLWIEAKGHVVHD 127

Query: 524 DLGLPLEAVGLWLDVTDATLAAEHIKQSEERYRILVEDSPAMICRYRPDLTLTFGNTPLA 583
           + G P+  +G+ +DV D          +        +  P ++     D  L  GN   +
Sbjct: 128 ESGAPISFLGVLIDVGDRRRLEAERDSARALLTNFADAMPGVVYAKDRDGRLMIGNHGTS 187

Query: 584 NYLECPPEQLPGLNLGDWLSDEQRQAFAHRIGQ-LSPEFPVSTAEISLELPGREHAWWVW 642
             +   P+   G    + L D+Q+ A      Q +         E +++ P    A W+ 
Sbjct: 188 ELVGKVPQDYIGRTDLELLEDKQQAAAIMETDQRIMVSGRSEQVEENVDFPDGRRAIWLS 247

Query: 643 SDRGVFDEQGALVEVQAVGRDNTE---VRRSQQQLTQSAKMA 681
           +   + D  G +V +     D TE   +  S +++ +  ++A
Sbjct: 248 TKSPLRDLGGEVVGLVGTSLDITERKAIEASHREIEERYRLA 289



 Score = 47.8 bits (112), Expect = 3e-09
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 9/234 (3%)

Query: 341 LSQWLALIHPADRQALTSRLHDLQALGKPLLTSVRLQRSDAEQKPLWYRVQGQVLG--VG 398
           L + +   HP DR  L   + D    G       R+ R+D +   LW   +G V+    G
Sbjct: 73  LEKIVTTAHPDDRSGLQRAIEDALDKGGRYAHQYRVLRADGQY--LWIEAKGHVVHDESG 130

Query: 399 DNRRWIGFMLDISDIKNQQLQAAAAHARLDNLIASSPAVIYVQRYVSGALHPAFFSDSLL 458
               ++G ++D+ D +  + +  +A A L N   + P V+Y +    G L       S  
Sbjct: 131 APISFLGVLIDVGDRRRLEAERDSARALLTNFADAMPGVVYAKDR-DGRLMIGNHGTS-- 187

Query: 459 PLLGWTLAD-CNHDSLASLIHPQDRELYFERSRQLLREG-SVRSRYRLRDKQGHYHWLLD 516
            L+G    D      L  L   Q      E  ++++  G S +    +    G     L 
Sbjct: 188 ELVGKVPQDYIGRTDLELLEDKQQAAAIMETDQRIMVSGRSEQVEENVDFPDGRRAIWLS 247

Query: 517 EAKLLRDDLGLPLEAVGLWLDVTDATLAAEHIKQSEERYRILVEDSPAMICRYR 570
               LRD  G  +  VG  LD+T+        ++ EERYR+ +  +  +I  +R
Sbjct: 248 TKSPLRDLGGEVVGLVGTSLDITERKAIEASHREIEERYRLAIGATSDVIWDWR 301



 Score = 33.5 bits (75), Expect = 6e-05
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 344 WLALIHPADRQALTSRLHD-LQALGKPLLTSVRLQRSDAEQKPLWYRVQGQVLGVGDN-- 400
           WL  IHP DR  +   +H  +   G       R +R+D     +  R  G VL   D   
Sbjct: 329 WLDHIHPDDRARIDESIHAVIDHGGSNWTDEYRFRRADGSHAFVLDR--GTVLRSDDGAP 386

Query: 401 RRWIGFMLDISDIKNQQLQAAAAHARL 427
            R IG MLD+++ K  +   AA+  RL
Sbjct: 387 MRMIGAMLDLTERKAAEAALAASEERL 413