Pairwise Alignments

Query, 528 a.a., cytochrome oxidase subunit I from Pseudomonas simiae WCS417

Subject, 546 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Variovorax sp. SCN45

 Score =  788 bits (2035), Expect = 0.0
 Identities = 367/538 (68%), Positives = 432/538 (80%), Gaps = 12/538 (2%)

Query: 1   MSAVIDDHGHA---------DHAHGPAKGLMRWVLTTNHKDIGTLYLWFAFAMFLLGGSF 51
           MSAV+D HGHA          H H    G  RWV  TNHKDIGTLYL F+F M ++GG  
Sbjct: 1   MSAVLDPHGHAVPGGHAHDEHHDHHAPTGWRRWVFATNHKDIGTLYLLFSFTMLMVGGVL 60

Query: 52  AMVIRAELFQPGLQIVQPAFFNQMTTMHGLIMVFGAVMPAFVGLANWMIPLMIGAPDMAL 111
           A++IRAELFQPGLQ+V P  FNQ TTMHGLIMVFGA+MPAFVG ANWMIPL +GA DMA 
Sbjct: 61  ALLIRAELFQPGLQLVNPELFNQFTTMHGLIMVFGAIMPAFVGFANWMIPLQVGASDMAF 120

Query: 112 PRMNNFSFWLLPAAFLLLVSTLFTPGGGPNFGWTFYAPLSTTYAPESVTFFIFAIHLMGI 171
            RMNNFSFWLL  A L+LV + F PGG P  GWT YAPL+    P S+   IFA+H+MG 
Sbjct: 121 ARMNNFSFWLLIPAALMLVGSFFMPGGAPAAGWTLYAPLTLQMGP-SMDAGIFAMHIMGA 179

Query: 172 SSIMGAINVVATILNLRAPGMTLMKMPLFVWTWLITAFLLIAVMPVLAGCVTMMLMDIHF 231
           SSIMG+IN++ TILN+RAPGMTLMKMP+F WTWLITA+LLIAVMPVLAG +TM L D HF
Sbjct: 180 SSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHF 239

Query: 232 GTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAFGAVSSIIPTFSRKPLFGYTSMVYA 291
           GTSFF+ AGGGDPV++QH+FWFFGHPEVYIMILPAFG +S ++P F+RK LFGY SMVYA
Sbjct: 240 GTSFFNPAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQVVPAFARKKLFGYASMVYA 299

Query: 292 TASIAFLSFIVWAHHMFVVGIPLVGELFFMYATLLIAVPTGVKVFNWVSTMWQGSLTFET 351
           T+SIA LSFIVWAHHMF  G+PL G+LFFMYAT+LIAVPT VK+FNW++TMWQGS+TFET
Sbjct: 300 TSSIAILSFIVWAHHMFTTGMPLTGQLFFMYATMLIAVPTAVKIFNWIATMWQGSMTFET 359

Query: 352 PMLFAVAFVILFTIGGFSGLMLAIAPADFQYHDTYFVVAHFHYVLVPGAIFGIFASAYYW 411
           PMLFAV F+ +FT+GGF+GL+LA+AP D Q  DTY+VVAHFHYVLV G++F +F+  YYW
Sbjct: 360 PMLFAVGFIFVFTMGGFTGLILAVAPIDTQLQDTYYVVAHFHYVLVAGSLFAMFSGFYYW 419

Query: 412 LPKWTGHMYDETLGKLHFWLSFVGMNMAFFPMHFVGLAGMPRRVPDYNLQFADFNMVSSV 471
           +PKWTG MY+ET GK+HFW S +  N+ FFPMHF+GLAGMPRR  DY +QFADFN V+SV
Sbjct: 420 VPKWTGVMYNETRGKVHFWWSLISFNVTFFPMHFLGLAGMPRRYADYPMQFADFNAVASV 479

Query: 472 GAFMFGATQI-FFLFIVIKCIRG-GTPAPAKPWDGAEGLEWSIPSPAPYHTFTTPPEV 527
           GAF FG  Q+ FFLF+V   +RG G  A  KPW+GAEGLEW +PSPAP+HTF  PP++
Sbjct: 480 GAFFFGFAQVYFFLFVVFPTMRGKGEKAAQKPWEGAEGLEWEVPSPAPFHTFENPPKL 537