Pairwise Alignments

Query, 528 a.a., cytochrome oxidase subunit I from Pseudomonas simiae WCS417

Subject, 840 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) / Cytochrome c oxidase polypeptide III (EC 1.9.3.1) from Sphingobium sp. HT1-2

 Score =  377 bits (969), Expect = e-109
 Identities = 188/499 (37%), Positives = 292/499 (58%), Gaps = 9/499 (1%)

Query: 17  PAKGL-MRWVLTTNHKDIGTLYLWFAFAMFLLGGSFAMVIRAELFQPGLQIVQPAFFNQM 75
           P +G+ +RW    N++ +G  Y+  AF   L  G  A+++R +L  P   +V P  FNQ+
Sbjct: 25  PPRGIFLRWTDCNNNR-VGVWYVLTAFGFMLFAGVLALIMRTQLAVPDNDLVGPGTFNQL 83

Query: 76  TTMHGLIMVFGAVMPAFVGLANWMIPLMIGAPDMALPRMNNFSFWLLPAAFLLLVSTLFT 135
            T+HG +M+F   +P F  ++  ++P ++GA D+  PR++ F +W      L +  ++F 
Sbjct: 84  FTLHGSMMMFLFAVPMFEAVSIILLPQLLGARDLPFPRLSAFGYWSFLIGGLFVGGSIFF 143

Query: 136 PGGGPNFGWTFYAPLSTT--YAPESVTFFIFAIHLMGISSIMGAINVVATILNLRAPGMT 193
               P+ GW  Y PL+T    +      ++  +  + +SS+  A+ ++  +L  R PGM 
Sbjct: 144 -NAAPDGGWFMYPPLTTRTDLSGLGADIWMLGLSFIEVSSVAAAVELIVGVLKCRPPGMR 202

Query: 194 LMKMPLFVWTWLITAFLLIAVMPVLAGCVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWF 253
           L  MPL+ W  L+ A +++   P L     +  M+      FF A  GGDP+L+QH+FW 
Sbjct: 203 LNLMPLYAWYILVVAVMILFAFPPLIAGDILFEMERLLDWPFFDARRGGDPLLWQHLFWI 262

Query: 254 FGHPEVYIMILPAFGAVSSIIPTFSRKPLFGYTSMVYATASIAFLSFIVWAHHMFVVGIP 313
           FGHPEVYI+ LP+    + ++PTF+ + L GY  +V A    AFLSF +W HHMF  G+P
Sbjct: 263 FGHPEVYIIFLPSIALFAMLVPTFANRHLLGYPWIVLAAVGTAFLSFGLWVHHMFTTGLP 322

Query: 314 LVGELFFMYATLLIAVPTGVKVFNWVSTMWQGSLTFETPMLFAVAFVILFTIGGFSGLML 373
            +   FF  A+  +A+PTGV++F +++T+W G +T+ TP+L+A   + +F IGG +G+M+
Sbjct: 323 KISLAFFSAASEAVAIPTGVQIFVFIATLWAGRVTWSTPLLYATGSLAIFVIGGLTGVMV 382

Query: 374 AIAPADFQYHDTYFVVAHFHYVLVPGAIFGIFASAYYWLPKWTGHMYDETLGKLHFWLSF 433
           A+AP D+Q HD+YF+VAH HYVL+ G +  +FA  YY+ P  TG    + LG++ FW+ F
Sbjct: 383 AVAPFDWQAHDSYFIVAHLHYVLIGGTLMPLFAGLYYYWPLVTGKKLSDRLGRVAFWMLF 442

Query: 434 VGMNMAFFPMHFVGLAGMPRRVPDY--NLQFADFNMVSSVGAFMFGATQIFFLFIVIKCI 491
           VG N+ FFPMH  GL GMPRRV  Y   L     NM S++GA++F A  +  + + +   
Sbjct: 443 VGANLTFFPMHLSGLMGMPRRVFTYPAELGLGGLNMASTLGAWLF-AAGVAVICVDLSLS 501

Query: 492 RGGTPAPAKPWDGAEGLEW 510
                A   PW+ A  LEW
Sbjct: 502 PRRVRAVRNPWN-AGTLEW 519