Pairwise Alignments

Query, 375 a.a., cytochrome B559 subunit alpha from Pseudomonas simiae WCS417

Subject, 392 a.a., Cytochrome c oxidase polypeptide II (EC 1.9.3.1) from Variovorax sp. SCN45

 Score =  315 bits (808), Expect = 1e-90
 Identities = 163/352 (46%), Positives = 226/352 (64%), Gaps = 11/352 (3%)

Query: 27  NMAPGATEVSHAVFDLHMTIFWICVVIGIIVFGAMFWSMILHRRSTGQVAAKFHESTTVE 86
           N+  G T+++     LH  +  +C VI + VF  MF+S+  HR+S G  AA FHES  VE
Sbjct: 42  NLPVGVTKIAQEQHLLHTIMMILCTVIFVAVFAVMFYSIWKHRKSVGHKAANFHESVVVE 101

Query: 87  ILWTVVPLLILIAMAIPATKTLINIYDSSESDIDIQVTGYQWKWHYKYL---GQDVEFFS 143
           ++WT+VP LI+I MA+PATK L+   D++ +D+ I+ TGYQWKW Y YL   G+ + F S
Sbjct: 102 VIWTIVPFLIVIVMALPATKVLVAQKDTTNADLTIKTTGYQWKWGYDYLNGEGEGLAFIS 161

Query: 144 NLATPAEQIHNQATKG---EHYLLEVDQPLVLPVGAKVRFLVTAADVIHSWWVPAFAVKR 200
            L +    + +   KG   + YLL+VD PLV+PV  K+R + TA DVIH++ VP   +K+
Sbjct: 162 TLDSSQRAMSDAGAKGAMPDDYLLKVDYPLVVPVNKKIRIITTANDVIHAFAVPQLGLKQ 221

Query: 201 DAIPGFVNEAWTRVEKPGIYRGQCAELCGKDHGFMPIVVEVKSKADYETWLG-ERKAEAA 259
           DAIPGFV + W R E  G Y GQC ELCGK+H FMPI V+V S ADY  W+  +RK  AA
Sbjct: 222 DAIPGFVRDTWFRAETIGTYYGQCQELCGKEHAFMPIQVKVVSAADYTAWVADQRKIAAA 281

Query: 260 KLKELTSKEWTLEELVARGDKVYHTTCVACHQAEGQGLPPMFPALKGS-KIATGPAADHL 318
           KL + T K WTL +++ RG+KVY   C ACHQA G+G  P+  AL G  K+     +  L
Sbjct: 282 KLDDPT-KVWTLPDMLVRGEKVYAANCAACHQANGKGAGPI-KALDGDPKVLDADHSVQL 339

Query: 319 SIVYHGKPGTAMAAFGKQLSEVDIAAVVTYERNAWGNNKGDMVTPKDVLAIK 370
            ++ +G+   AM ++ KQLS+ D+AAV TY +N+W N  G +V P +VLA++
Sbjct: 340 HVLLNGQNNGAMPSW-KQLSDTDLAAVATYTKNSWSNKTGQLVQPAEVLALR 390