Pairwise Alignments

Query, 375 a.a., cytochrome B559 subunit alpha from Pseudomonas simiae WCS417

Subject, 293 a.a., cytochrome c oxidase subunit II from Magnetospirillum magneticum AMB-1

 Score =  173 bits (438), Expect = 6e-48
 Identities = 85/238 (35%), Positives = 135/238 (56%), Gaps = 5/238 (2%)

Query: 24  WTTNMAPGATEVSHAVFDLHMTIFWICVVIGIIVFGAMFWSMILHRRSTGQVAAKFHEST 83
           W  +   G +     +  L   I  + VVI ++V G + ++    R       A +  +T
Sbjct: 42  WALSFQHGVSPTMERITSLATFINGVIVVITLLVSGLLLYACTRFRADRNPKPATWSHNT 101

Query: 84  TVEILWTVVPLLILIAMAIPATKTLINIYDSSESDIDIQVTGYQWKWHYKYLGQDVEFFS 143
            +E++WT +P +IL+ +AIP+ + L  +    ++D+ +++ G+QW W Y+Y   D +F S
Sbjct: 102 PLEVVWTAIPAVILLLIAIPSFRLLYFMDRVHDADMTLKIVGHQWYWTYEYPDHDFKFDS 161

Query: 144 NLATPAEQIHNQATKGEHYLLEVDQPLVLPVGAKVRFLVTAADVIHSWWVPAFAVKRDAI 203
           N+   AE +      G+  LL  D  LV+P G  +R  +TA DVIHSW VPAF +K DA+
Sbjct: 162 NMVQ-AEDLK----PGQPRLLTADNTLVVPAGVPIRLQMTADDVIHSWSVPAFGIKTDAV 216

Query: 204 PGFVNEAWTRVEKPGIYRGQCAELCGKDHGFMPIVVEVKSKADYETWLGERKAEAAKL 261
           PG +NE W +V +PG Y GQC++LCG +HGFMP+ V+   K ++  W+ + K   A L
Sbjct: 217 PGRLNETWVQVNEPGTYYGQCSQLCGVNHGFMPVHVKAVPKEEFLAWVAQAKKTYAHL 274