Pairwise Alignments

Query, 653 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 539 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  182 bits (463), Expect = 3e-50
 Identities = 151/490 (30%), Positives = 234/490 (47%), Gaps = 40/490 (8%)

Query: 191 NIRSQADLL----EQLPLLGVKASAESSADDFSALMGLENTGKTEAQDTGVDLKRELNSL 246
           N R+  DLL     Q     +  + +   + F+ L  L +T + +A    +   RE    
Sbjct: 63  NGRNTRDLLIDQDNQQAQEAIGGTRQRITEAFATLEPLLDTAEGKAAYATLKTHREA--- 119

Query: 247 LTRYPAELKRTREQIQQ--RTDLAAQTHQKIDTVQHAIAGLEPVVRAQHGKIQGEVRLMQ 304
              Y A   + +  I+Q  R    AQ  Q++   + A+      + A  G++  E     
Sbjct: 120 ---YVAAFTQVQALIKQGAREQGLAQLKQQVMPAELAVFKSLDALMAMQGRLFAEREQAA 176

Query: 305 GV--------MIGLILLIALLIDT----LQRRLARVL----TNLAPALSTWAEGDFSQPI 348
            V        MIGL LL   L+      + R + R L       A  LS  A+GD +  +
Sbjct: 177 QVLYDEARRNMIGLFLLCLALVVAAAIIVTRSVIRPLGGEPDEAARVLSHIAQGDLTIVV 236

Query: 349 ALGKTN-----RELHDIEASLNRLRAYLVDLVGTIRGNAEEVVGSSRALAELSSGLHDGA 403
            +G +      R LH ++ +LN++       V  I  + + V  SS  L+ +SS      
Sbjct: 237 PVGNSAEGSVMRNLHQMQQNLNQM-------VRHIATSVDGVASSSEELSAVSSQTSSSL 289

Query: 404 ERQAGDTAQIRDSLGELEATIQQVAGDASQAAGASRSAGQAVEQGQRVIGLSLTGLHALV 463
           + Q  +  Q   ++ E+ A + +VA +A   + ASR + Q  ++G+  +  ++  ++ L 
Sbjct: 290 QSQGQEIEQAATAVNEMTAAVDEVARNAVSTSEASRLSEQTAQRGRAQVQETVASINTLA 349

Query: 464 GEVQQNAQMIEKLAEESATIGGVLTVIRSIADQTNLLALNAAIEAARAGEAGRGFAVVAD 523
             V + ++ I++LA     I  VL VIRSIADQTNLLALNAAIEAARAG+AGRGFAVVAD
Sbjct: 350 TGVVETSERIQQLAGRVQDISSVLEVIRSIADQTNLLALNAAIEAARAGDAGRGFAVVAD 409

Query: 524 EVRSLAQRTAGATAEIQSLIAGLQSAAHQSVQGMRAQVEHAEATAQQAQAADGALDEIVG 583
           EVR+LA RT  +T EI+ +I  ++     +V  M +  E  +AT   AQ +  ALDEI  
Sbjct: 410 EVRALAHRTQASTQEIEQMIGNIRQDTEHAVAAMHSSSERVQATLSVAQRSGEALDEITR 469

Query: 584 AIQTISETAVRIADVTAQQSGAVSEIRDNSERIHQMGEDNLLRIGQGRSQGEHLLVLGGQ 643
           +I  I+E  + IA  T +Q+    E+  N   I  + +  L       + G  L  + G 
Sbjct: 470 SISQINERNMMIASATEEQALVAREVDRNLVGIRNLSQQVLQGALHTETAGHDLAGMAGA 529

Query: 644 LNTAVQAFRV 653
           L+  V  F+V
Sbjct: 530 LHQTVARFKV 539



 Score = 25.4 bits (54), Expect = 0.007
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 20/133 (15%)

Query: 451 VIGLSLTGLHALVGEVQQNAQMIEKLAEESATIGGVLTVIRSIADQTNLLALNAAIEAAR 510
           ++GL    LH L    QQ+ Q++++   + A I  + T +R     T  L ++   + A+
Sbjct: 21  LVGLVFYALHDLATLKQQSEQIVQQDWPKIAPIMVIATGVRDNGRNTRDLLIDQDNQQAQ 80

Query: 511 AGEAG------RGFAVVADEVRSLAQRTAGAT------------AEIQSLIAGLQSAAHQ 552
               G        FA +   + +   + A AT             ++Q+LI   Q A  Q
Sbjct: 81  EAIGGTRQRITEAFATLEPLLDTAEGKAAYATLKTHREAYVAAFTQVQALIK--QGAREQ 138

Query: 553 SVQGMRAQVEHAE 565
            +  ++ QV  AE
Sbjct: 139 GLAQLKQQVMPAE 151