Pairwise Alignments

Query, 923 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1052 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  193 bits (491), Expect = 4e-53
 Identities = 154/535 (28%), Positives = 249/535 (46%), Gaps = 58/535 (10%)

Query: 379 VEARFSLSRDLAASNAEIAAKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQ 438
           +E   +L     A+++   AK+ FLA +SHEIRTP+ GVLG  ELL  T L+ +Q+DY+Q
Sbjct: 466 IEDAAALEEARQAADSASQAKSRFLATMSHEIRTPLYGVLGTLELLGLTSLAPRQQDYLQ 525

Query: 439 TIHSAGNELLTLINEILDISKLESGQIELDDVQFDLNALIEDCLSIFRAKAEQQNVELIS 498
           TI  +   L  LI+++LD+SK+E+GQ+ L+   F    L EDC+  + A A  + ++L +
Sbjct: 526 TIQRSSTTLFQLISDVLDVSKIEAGQMTLELQDFCPLELTEDCVRTYGAFARSKGLQLYA 585

Query: 499 FIQPQVPRVISGDPTRLRQAMLSLLENALQKTDEGEVLI-VVALDDRSTKPRLRIAVQDS 557
            I   +P  + GDP R+RQ + +LL NA++ TD G V++ +  L+    +  L+  V DS
Sbjct: 586 CIDANLPDRLRGDPLRIRQILNNLLSNAIKFTDNGRVVLRLRGLETSDGRVELQWQVSDS 645

Query: 558 GLPMEAAERDALLHSELHSKNFFSATRLNG-HLGLVIARQLILLMNGEFGIKSGSHQGST 616
           G+ +  A++  L      +++   ATR  G  LGL I + L  LM+G+  + S    GS+
Sbjct: 646 GVGIAQAQQHQLFDPFYQAED---ATRQAGAGLGLAICKWLCELMHGQLNVVSEPGLGSS 702

Query: 617 LWLTLPLDP---ERLEHPTSDLDGPLKGARVLVVDDNDTCRKVLVQQCSAWGLNVSAVPS 673
             L + L+P      + P    D P    R    +      + ++      GL+     +
Sbjct: 703 FTLQVALEPVPGTLADCPVFSPDTPAVYVRAPEAERT----QCMIDWLKRLGLDSRVFAA 758

Query: 674 GKEALALLRTKAHLRDYFDVVLLDQNMPGMTGMQLAAKIKEDPSLNHDILLIMLTGISNA 733
              A ALL    H          D   PG                      I+ +    +
Sbjct: 759 DTPAAALLVDFTH----------DPAWPGTR--------------------IIASAGGPS 788

Query: 734 PSKIIARNCGIKRILAKPVAGYTLKTTLADELTQRSKGNVPPRPVLNTPAAITVPTDFRI 793
           P++    +  +     + +A          E   R       RP+           + ++
Sbjct: 789 PAQPYGSDWAVDANDVRAIAWAVYLAQHGAEADHRPAPPTQARPL-----------NLQV 837

Query: 794 LVAEDNSISTKVIRGMLGKLNLNPDTASNGEEALEAMKAQRYDLVLMDCEMPILDGFSAT 853
           LVAEDN I+  +I+  L  L  +    S+GE+AL      R+DLVL D  MP+++G+   
Sbjct: 838 LVAEDNVINAAIIQEQLEALGCSVVLTSDGEQALTQWLPGRFDLVLTDVNMPVMNGYQLA 897

Query: 854 QQLRAWEVSHQRVRTPVVALTAHILSEHKERARQAGMDGHMAKPVELSQLRELVE 908
           + LR      Q    P++ +TA+ + E  E     GM+G M KP+ L+ LR  +E
Sbjct: 898 EALR-----RQDATLPIIGITANAMREEGEHCTAVGMNGWMVKPLNLATLRAQLE 947



 Score = 43.9 bits (102), Expect = 5e-08
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 21/181 (11%)

Query: 643  RVLVVDDNDTCRKVLVQQCSAWGLNVSAVPSGKEALALLRTKAHLRDYFDVVLLDQNMPG 702
            +VLV +DN     ++ +Q  A G +V     G++AL        L   FD+VL D NMP 
Sbjct: 836  QVLVAEDNVINAAIIQEQLEALGCSVVLTSDGEQALT-----QWLPGRFDLVLTDVNMPV 890

Query: 703  MTGMQLAAKIKEDPSLNHDILLIMLTGISNAPSKIIARNC---GIKRILAKPVAGYTLKT 759
            M G QLA  ++   +       + + GI+    +    +C   G+   + KP+   TL+ 
Sbjct: 891  MNGYQLAEALRRQDA------TLPIIGITANAMREEGEHCTAVGMNGWMVKPLNLATLRA 944

Query: 760  TLAD--ELTQRSKGNVPP-----RPVLNTPAAITVPTDFRILVAEDNSISTKVIRGMLGK 812
             L    ++   +  ++PP     R +  T     V T    L  +D S + + +  M G 
Sbjct: 945  QLEKHCKIEVPAVVDMPPLSPKMRELFVTTLRQDVHTTLAALDNQDASGTAQQLHSMAGA 1004

Query: 813  L 813
            L
Sbjct: 1005 L 1005