Pairwise Alignments

Query, 923 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  256 bits (655), Expect = 5e-72
 Identities = 177/524 (33%), Positives = 293/524 (55%), Gaps = 30/524 (5%)

Query: 398  AKAEFLAKISHEIRTPMNGVLGMTELLLGTPLSVKQRDYVQTIHSAGNELLTLINEILDI 457
            AK+EFLA +SHEIRTP+NGV+G T+L+L T LS  Q  Y+  ++ +GN LL +IN+ILD 
Sbjct: 691  AKSEFLANMSHEIRTPLNGVIGFTDLVLKTDLSETQAQYLSIVNQSGNALLNIINDILDF 750

Query: 458  SKLESGQIELDDVQFDLNALIEDCLSIFRAKAEQQNVELISFIQPQVPRVISGDPTRLRQ 517
            SK+E+G++ELD  + DL  L E    I   +  ++ +E++  I P +PR I  D  R++Q
Sbjct: 751  SKIEAGKLELDIDRCDLYELTEQTSDIITYEVHKKGLEMLLNIHPDIPRFIWVDSVRVKQ 810

Query: 518  AMLSLLENALQKTDEGEV---LIVVALDDRSTKPRLRIAVQDSGLPMEAAERDALLHSEL 574
             M++LL NA + T+EGE+   L  +  D+ S +  +R +V+D+G+ ++A ++  +   E 
Sbjct: 811  IMVNLLGNASKFTEEGEIELQLYPIDKDEASREMVIRFSVRDTGIGIKAEKQTKIF--EA 868

Query: 575  HSKNFFSATRLNG--HLGLVIARQLILLMNGEFGIKSGSHQGSTLWLTLPLDPERLEHPT 632
             S+   S T+  G   LGL I+ +L+ LM+    + S   +GST +  L +  E  E  T
Sbjct: 869  FSQEDVSTTKKYGGTGLGLTISNRLLQLMHSGLQLHSTVGKGSTFYFDLNVKYEYGERIT 928

Query: 633  SDLDGPLKGARVLVVDDNDTCRKVLVQQCSAWGLNVSAVPSGKEALALLRTKAHLRDYFD 692
              L+  L    VL+VDDND  R ++ +  +  G++ S   +G EA+     K    + FD
Sbjct: 929  --LEEDLSVENVLIVDDNDNNRMIIERMMALRGISTSQAKNGFEAI----QKFVEGEKFD 982

Query: 693  VVLLDQNMPGMTGMQLAAKIKEDPSLNHDILLIMLTGISNAPSKII--ARNCGIKRILAK 750
            VVL+D +MP M G++   KI+E      D   I+    S+   KI+   +  G+++ L K
Sbjct: 983  VVLMDYHMPYMNGIETIRKIREIV----DRQPIIFLHSSSDDDKILKACKELGVRKKLVK 1038

Query: 751  PVAGYTLKTTLADELTQRSKGNVPPRPVLNTPAAITVPTDFRILVAEDNSISTKVIRGML 810
            P+    +   L   + ++          ++ P  +  P D ++L+ EDN+I+  + + ++
Sbjct: 1039 PIKLQEMYDALL-SINKKQDYRKATDQNIDLPKNL-FPNDGKVLIVEDNTINMLLAKTVI 1096

Query: 811  GKLNLNPDT----ASNGEEALEAMKAQRYDLVLMDCEMPILDGFSATQQLRAWEVSHQRV 866
               NL+P T    A+NG+EALE MK +   ++ MD +MP ++G+ ATQ +R     H  +
Sbjct: 1097 H--NLSPATAILEAANGKEALEVMKDELPSVIFMDVQMPEMNGYEATQAIRKKYNKHNIL 1154

Query: 867  RTPVVALTAHILSEHKERARQAGMDGHMAKPVELSQLRELVEFW 910
               ++ALTA  +   +E+  QAGM+  +AKP     + +L+E W
Sbjct: 1155 ---IIALTAGNIKGEREKCMQAGMNDFIAKPFVEEDVIKLMEKW 1195