Pairwise Alignments

Query, 198 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 215 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score = 95.1 bits (235), Expect = 8e-25
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 8/199 (4%)

Query: 4   VLFSVYLKMLVLYSPFFVLSCFISLTRGYSSKERRRLAWKVALATLVSSVLLYLFGRVIF 63
           V F  ++ +  L +P  ++  FIS+T   ++  R +      L+  +   +    G  I 
Sbjct: 10  VYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLGDTIL 69

Query: 64  SVFGITVDAFRIGAGSVLFISALGMAQGKSAVQTDN--------VQQDVTIVPLTIPLTV 115
            +FGI++D+FRI  G ++   A+ M  GK      N        V++ + +VPL +PL  
Sbjct: 70  QLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMA 129

Query: 116 GPGTIGALLVMGVSQPHWDDKITAILSIALASLTVGVVLYLSNRIERILGDQGLQIVSRL 175
           GPG I + +V G             ++IAL +L    +  ++  + R+L   G+ +++R+
Sbjct: 130 GPGAISSTIVWGTRYHSISYLFGFFVAIALFALCCWGLFRMAPWLVRVLRQTGINVITRI 189

Query: 176 MGLFVCALAAQIIFTGVRG 194
           MGL + AL  + I TG++G
Sbjct: 190 MGLLLMALGIEFIVTGIKG 208