Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  131 bits (329), Expect = 7e-36
 Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 1/159 (0%)

Query: 3   PSSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQILEPRDYL 62
           P  H AA+  +Y  HH+WL GWL  +      AAD+A +TFVR+L  R    + +PR YL
Sbjct: 6   PLDH-AAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQPRAYL 64

Query: 63  ATIARGLVIDRYRRHAIEQAYKQTLAERPDATAISEEDKAIIIETLVAVDKALAGLGERA 122
           ++IAR L+ID+YRR  +E+AY ++LA  P     SEE + +I+++L  +D+ L  L  R 
Sbjct: 65  SSIARSLMIDQYRRRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQLKPRV 124

Query: 123 RRIFMLSQVEGLTYQQIADELQVSLTTVKKHMIRALTEC 161
           R  F+L+Q++GLT  QIA  L VS  TV++ + +AL  C
Sbjct: 125 REAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHAC 163