Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 169 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score =  134 bits (336), Expect = 1e-36
 Identities = 65/152 (42%), Positives = 95/152 (62%)

Query: 10  VQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQILEPRDYLATIARGL 69
           V  +Y  HH WL   L+ KL N  +AAD+A DTFVRIL    A  + EPR YL T+A  +
Sbjct: 11  VNTLYSDHHPWLLDMLRRKLGNLDNAADLAQDTFVRILSSNEAGPLREPRAYLTTVASRI 70

Query: 70  VIDRYRRHAIEQAYKQTLAERPDATAISEEDKAIIIETLVAVDKALAGLGERARRIFMLS 129
               +RR A+E+ Y + +A  P+A+A S E + +++E L AV + L GL    R IF+++
Sbjct: 71  AAQYFRRLALERTYLEAIAHLPEASAPSPETRLLVVEALAAVSRVLDGLKPHVREIFLMA 130

Query: 130 QVEGLTYQQIADELQVSLTTVKKHMIRALTEC 161
           Q++GLTY QIA +L V++  V+K M++A   C
Sbjct: 131 QLDGLTYSQIAQQLGVTINVVQKAMLKAYRHC 162