Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  145 bits (367), Expect = 3e-40
 Identities = 72/158 (45%), Positives = 108/158 (68%)

Query: 4   SSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQILEPRDYLA 63
           S+ T+ V+ +Y  HH+WL GWL+ +L     AAD+A DT++R+L  R A Q++EPR +LA
Sbjct: 9   SALTSTVEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLA 68

Query: 64  TIARGLVIDRYRRHAIEQAYKQTLAERPDATAISEEDKAIIIETLVAVDKALAGLGERAR 123
           T+A+ ++ + +RR  +E+AY Q LA+ P+  A  EE KAII ETL+A+D  L GL    +
Sbjct: 69  TVAKRVLCNHFRRQELERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVK 128

Query: 124 RIFMLSQVEGLTYQQIADELQVSLTTVKKHMIRALTEC 161
           R F+L+QV+GL   +IA EL +SL TVK+++ +A   C
Sbjct: 129 RAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRC 166