Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  151 bits (382), Expect = 5e-42
 Identities = 76/153 (49%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 10  VQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQI-LEPRDYLATIARG 68
           VQ +Y +HH WL GWL  KL NACDAAD+AHDTFVR+L  +       EPR  L  IA+G
Sbjct: 12  VQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLTHIAKG 71

Query: 69  LVIDRYRRHAIEQAYKQTLAERPDATAISEEDKAIIIETLVAVDKALAGLGERARRIFML 128
           LV+DR+RR  +E+AY + +A  P     S E + +I+ETL  +D  L  +  R R++F+L
Sbjct: 72  LVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVRQVFLL 131

Query: 129 SQVEGLTYQQIADELQVSLTTVKKHMIRALTEC 161
           SQ++GLTY QIA++LQVSL T+K+ M  A   C
Sbjct: 132 SQLDGLTYAQIAEQLQVSLITIKRDMRTAFLAC 164