Pairwise Alignments

Query, 500 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 292 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  140 bits (354), Expect = 5e-38
 Identities = 90/292 (30%), Positives = 151/292 (51%), Gaps = 19/292 (6%)

Query: 211 GMSLGSILLLAALGLAITFGLLGVINMAHGEMLMLGAYSTYMVQLLMQRYMPQAIEFYPL 270
           G+  G I  L A+GL + +GL+ ++N++HGE LMLGA++T+            A+   PL
Sbjct: 13  GLITGGIYALVAIGLNLQYGLMRIMNISHGEFLMLGAFATWWAHT--------ALGISPL 64

Query: 271 IALPVAFFVTAAIGMALERTVIRHLYGRP-------LETLLATWGISLMLIQLVRLVFGA 323
           + +PVAF +  A+GM +     R +  R          +L+  +G+  ++     LV+G 
Sbjct: 65  LFMPVAFALLMALGMTVHWLCFRQVAARAPNVDVFEARSLMVGFGLMFLVQNTALLVWGG 124

Query: 324 QNVEVSNPEWLSGGVQVLPNLVLPYNRIVIIAFALCVVVLTWLLLNKTRLGLNVRAVTQN 383
              ++   ++L+  VQV   +    N++V+   AL + +L   LL  T LG  VRA+ Q+
Sbjct: 125 ---DLRGYDYLADPVQV-GEMRFTANKLVLFGVALALSLLLIALLKLTLLGKAVRALMQS 180

Query: 384 RNMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLGGV 443
              A   G+ T R+  L FG+G G++G+ G  LS    + P +G+ Y + + +V+ LGG 
Sbjct: 181 PTGAQLVGINTKRLHPLMFGIGLGLSGVAGALLSMTYEISPSMGEPYTVTALIVITLGGF 240

Query: 444 GQLAGSVMAAFGLGIANKILEPQIGAVLGKILILALIILFIQKRPQGLFALK 495
           G +AGS++    LG+   +        L  +L  A+ I  +  RP GLF+ K
Sbjct: 241 GSIAGSLVGGLLLGVVEALGMYYTSPSLKMLLSYAVFIGVLIWRPNGLFSRK 292