Pairwise Alignments

Query, 500 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 291 a.a., Broad-specificity amino acid ABC transporter, permease protein 1 from Variovorax sp. SCN45

 Score =  152 bits (384), Expect = 1e-41
 Identities = 100/301 (33%), Positives = 157/301 (52%), Gaps = 33/301 (10%)

Query: 204 ILGQAFSGMSLGSILLLAALGLAITFGLLGVINMAHGEMLMLGAYSTYMVQLLMQRYMPQ 263
           +L Q   G+  GS   + +LGLA+ FGLL VIN AHG + MLGA  T+M           
Sbjct: 8   LLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAVLTWM----------- 56

Query: 264 AIEFYPL---IALPVAFFVTAAIGMALERTVIR------HLYGRPLETLLATWGISLMLI 314
           A+E++ +   + L  A  V    G+ +ER ++R      HLYG     LL T G++L++ 
Sbjct: 57  AMEYFGINYWVMLIAAPIVIGIFGVLIERLLLRWIYKLDHLYG-----LLLTLGLTLLIE 111

Query: 315 QLVRLVFGAQNVEVSNPEWLSGGVQVLPNLVLPYNRIVIIAFALCVVVLTWLLLNKTRLG 374
            + R V+G   +    P+ LS     L  +VLP  R  ++  +L +   TW ++ KTRLG
Sbjct: 112 GVFRSVYGVSGLPYDAPDALSSATN-LGFMVLPNYRAWVVVASLVICFATWYVIEKTRLG 170

Query: 375 LNVRAVTQNRNMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDS 434
             +RA T+N  +    GV    +  L +  G  +A   GV  + +  V P +GQ+ II  
Sbjct: 171 AYLRAGTENPRLVEAFGVNVPLMITLTYAFGCALAAFAGVLAAPVMQVSPLMGQNLIIVV 230

Query: 435 FLVVVLGGVGQLAGSVMAAFGLGIA---NKILEPQIGAVLGKILILALIILFIQKRPQGL 491
           F VVV+GG+G + G+++   GLG+     K+  P+  + +  + ++ +I+L I  RP GL
Sbjct: 231 FAVVVIGGMGSIMGAILTGLGLGVIEGFTKVFYPEASSTV--VFVIMVIVLLI--RPAGL 286

Query: 492 F 492
           F
Sbjct: 287 F 287