Pairwise Alignments

Query, 500 a.a., urea ABC transporter permease from Pseudomonas simiae WCS417

Subject, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  149 bits (377), Expect = 1e-40
 Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 25/300 (8%)

Query: 205 LGQAFSGMSLGSILLLAALGLAITFGLLGVINMAHGEMLMLGAYSTYMVQLLMQRYMPQA 264
           + Q  + ++L S+L + A GLA+ FGL  V+N  HG + MLGAY  Y    L   +    
Sbjct: 9   IAQLANALALASLLTILASGLALIFGLRDVMNFGHGALFMLGAYLGYTFSGLFNFW---- 64

Query: 265 IEFYPLIALPVAFFVTAAIGMALERTVIRHLYGRP-LETLLATWGISLMLIQLVRLVFGA 323
                  AL +   + A +G+  E   IR L  R  ++  L T+G++L+L Q+V  V+G 
Sbjct: 65  ------AALVIVPLLLALLGVLFEYAAIRPLQRRSHMDVALVTFGLALILSQVVIKVWGT 118

Query: 324 QNVEVSNPEWLSGGVQVLPNLVLPYNRIVIIA--FALCVVVLTWLLLNKTRLGLNVRAVT 381
             + VS P  L+G + +  +   P  RI +IA  F  CV++  W  L  TR G++VRAV+
Sbjct: 119 APLSVSAPPSLAGSLDLFGH-AYPAYRIFLIAMGFGTCVLLAAW--LKWTRSGMHVRAVS 175

Query: 382 QNRNMAACCGVPTGRVDMLAFGLGSGIAGLGGVALSQIGNVGPDLGQSYIIDSFLVVVLG 441
           Q   +A   GV T R+ +L   LG+G AGL GV      +V P +G S +I   +VVV+G
Sbjct: 176 QQPMVARMMGVNTDRLSLLVVCLGTGFAGLAGVLAGPYLSVDPAMGASILISCLIVVVIG 235

Query: 442 GVGQLAGSVMAA--FGL-GIANKILEPQIGAVLGKILILALIILFIQKRPQGLFALKGRV 498
           G+G + G++ AA  FGL  +   ++ P + AV+   ++L +++L+   RPQGL   +GRV
Sbjct: 236 GLGSIGGAIAAAVVFGLIQVIGALISPTL-AVMAPYMLLFIVLLW---RPQGLG--RGRV 289